DR908861

Overview
NameDR908861
Unique NameDR908861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 2
Query:   23 WAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            WA  L G E+    +FA ALEVIP  LAEN+GL+P+ I+ ELR  H +G+   G++V  G++  + E  V++PL V T AIT A E   MIL+IDD++  +
Sbjct:  425 WAPTLGGREQLAAEAFASALEVIPRALAENSGLDPIDILVELRKAHEEGKTTYGVDVFSGEVACMKERGVLEPLKVKTQAITSATEVAIMILRIDDVIAAK 525          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.135e-18
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            L+ QL  +A ++ G E+  V +FA+ALEVIP TLAENAG +P+  + +LR++H  G+  +G++   G + ++  E +V+PL V T AI  A E   MIL+IDD++
Sbjct:  415 LAMQLRDFADSVGGREQLAVEAFADALEVIPRTLAENAGHDPIDSLVDLRSQHDGGDTEAGLDAYNGDVIDMESEGIVEPLRVKTQAIESATEAATMILRIDDVI 519          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.788e-18
Identity = 47/107 (43.93%), Postives = 80/107 (74.77%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQ--GEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            L+++L  +A++++G E+  V++FA+ALEVIP TLAEN+GL+P+ ++ +LR  H +  GE+  G++V +G++ ++LE+ VV+PL V T AI  A E   M+L+IDD++
Sbjct:  415 LAKRLRKFAESVAGREQLAVKAFADALEVIPRTLAENSGLDPIDMLVKLRAAHEKEGGEV-YGLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDVI 520          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 2
Query:   11 QLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            +L ++A+ + G ++  +  FA+A+E IP  LAENAGL+P+ I+ +LR  HA+G    GINV  G+I ++++  V++P+ V   AI  A E   MIL+IDD++  +
Sbjct:  419 RLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATK 523          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.258e-17
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR*F 331
            ++R+L  +A  +SG E+  V +FA+ALE++P TLAENAGL+ + ++ +LR  H +     GI+V  G I ++ E  V++P  V   AI  AAE   MIL+IDD++  R F
Sbjct:  411 IARKLREYADTISGREQLAVSAFADALEIVPKTLAENAGLDSIDVLVDLRAAHEESPY-MGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMIAARGF 519          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.867e-17
Identity = 44/106 (41.51%), Postives = 70/106 (66.04%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQIT-NILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            L+ +L  +A+++ G E+  +  FAEALE IP  LAE AG+ P+  + +LR RHA+G +NSGI+   G+I  ++++ NV++P+ V +  +  A E    ILKIDD+V
Sbjct:  424 LALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQALMDLRARHAKGLVNSGIDAVNGKIADDMMKINVIEPVRVKSQVLKSAVEAATAILKIDDLV 529          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.530e-16
Identity = 40/105 (38.10%), Postives = 69/105 (65.71%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            L+ +L  +A ++ G E+  + +FA+ALE+IP TLAENAG++P+  + +L+  H +G I+ G+++    + ++  + VV PL V T A+  A E   MIL+IDD++
Sbjct:  415 LAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKAEHEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 519          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 44/105 (41.90%), Postives = 70/105 (66.67%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            ++++L  +A ++SG E+  V +FAEALE++P TLAENAGL+ + ++ +LR  H +     GI+V  G+I ++ E  V++P  V   AI  AAE   MIL+IDD++
Sbjct:  411 IAKRLKDYADSISGREQLAVSAFAEALEIVPKTLAENAGLDSIDVLVDLRAAHEESTY-MGIDVFDGKIVDMKEAGVIEPHRVKKQAIQSAAEAAEMILRIDDVI 514          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQIT-NILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            L+ +L  +A+++ G E+  +  FAEALE IP  LAE AG+ P+  + +LR +HA+G IN+G++V  G+I  ++L  NV++P+ V    +  A E    ILKIDD++
Sbjct:  424 LALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQTLMDLRAKHAKGLINAGVDVMNGKIADDMLALNVLEPVRVKAQVLKSAVEAATAILKIDDLI 529          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.609e-16
Identity = 43/108 (39.81%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            LS +L  +AK + G E+  + +FAEAL+VIP TLAENAGL+P+  + ++   H +     GI+V +G+  +++E  V++P+ V   AI  A+E   MIL+IDD++  +
Sbjct:  418 LSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKEKGPTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAAQ 525          
The following BLAST results are available for this feature:
BLAST of DR908861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
THSA_ARCFU1.478e-1945.54Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THSA_HALSA2.135e-1842.86Thermosome subunit alpha OS=Halobacterium salinari... [more]
THS_METJA2.788e-1843.93Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THSB_THEAC1.807e-1740.00Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSA_METTH5.258e-1741.82Thermosome subunit alpha OS=Methanobacterium therm... [more]
THSA_SULAC6.867e-1741.51Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]
THSA_THEAC1.530e-1638.10Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THSB_METTH1.998e-1641.90Thermosome subunit beta OS=Methanobacterium thermo... [more]
THSA_SULTO1.998e-1640.57Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THS_PYRAB2.609e-1639.81Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16989 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-14_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908861 ID=DR908861; Name=DR908861; organism=Citrus sinensis; type=EST; length=570bp
GTTGTCAAGGCAGTTGGGAGCATGGGCAAAGGCATTGTCCGGCATGGAAA
GGTATTGTGTGAGGTCATTTGCAGAGGCACTTGAGGTTATTCCCTATACT
TTGGCTGAGAATGCTGGGTTGAACCCGCTTGCCATTGTGACTGAACTGAG
GAACAGGCATGCACAAGGGGAAATCAATTCTGGAATCAATGTGAGGAAGG
GGCAGATTACCAATATTTTGGAGGAGAATGTGGTGCAGCCACTGCTTGTG
AGCACAAGTGCAATAACACTGGCTGCAGAGTGTGTAAGGATGATTTTGAA
GATTGATGACATCGTTACTGTGAGGTAGTTTTGCATCCAAAGATGAAAGT
GTGTTCCCTACTTATGTTTTGCGTCCTTGTATTATCTGAATTAGTAAGCT
CTGTTTTAGGATTGATTGCTGTTAAGAGTTTTGACTTTGTTATTTTTGTT
GCCAAATATTTGGTTTGAATTTGCTGTTTTATGGTTAATTAGCAGTCGAA
TGACTGATTAACTACTATTTCAGCCTTTATATGTTTTACCTTGTGAGAAG
CTCTAATCAGATCTATGCTT
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