DR908861

Overview
NameDR908861
Unique NameDR908861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.408e-16
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            LS +L  +AK + G E+  + +FAEAL+VIP TLAENAGL+P+  + ++   H +     GI+V +G+  +++E  V++P+ V   AI  A+E   MIL+IDD++
Sbjct:  418 LSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKEKGQTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVI 522          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 9.916e-16
Identity = 43/105 (40.95%), Postives = 68/105 (64.76%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            LS +L  +AK + G E+  + +FAEAL+VIP TLAENAGL+P+  + ++   H +     G++V +G+  ++LE  V+ P+ V   AI  A+E   MIL+IDD++
Sbjct:  418 LSIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVI 522          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.916e-16
Identity = 40/108 (37.04%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            L+ +L  +AK + G E   + +FA+AL++IP TLAENAGL+ + ++ ++ + H    +  GI+V +G+  ++LE+ +++PL V   AI  A+E   MIL+IDD++  +
Sbjct:  418 LAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAK 525          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.916e-16
Identity = 40/108 (37.04%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 325
            L+ +L  +AK + G E   + +FA+AL++IP TLAENAGL+ + ++ ++ + H    +  GI+V +G+  ++LE+ +++PL V   AI  A+E   MIL+IDD++  +
Sbjct:  418 LAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAK 525          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.295e-15
Identity = 38/105 (36.19%), Postives = 67/105 (63.81%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            L+ +L  +A ++SG E+  V ++A+ALE++P  LAENAGL+ +  + +LR  H  G++ +G+NV  G++ +  +  VV+       A+  A+E   ++LKIDDI+
Sbjct:  419 LASRLRNYADSVSGREQLAVEAYADALELVPRVLAENAGLDSIDTLVDLRAAHEDGQVRAGLNVFTGEVEDAFDAGVVETAHAKEQAVASASEAANLVLKIDDII 523          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            L+ +L  +AK + G E+  + +FAEAL+VIP TLAENAGL+P+  + ++   H +     G++V +G+  +++E+ V+ PL V   AI  A+E   MIL+IDD++
Sbjct:  418 LAIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPVETLVKVIAAHKEKGPTIGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVI 522          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 42/105 (40.00%), Postives = 68/105 (64.76%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            L+ +L  +AK + G E+  + +FAEAL+VIP TLAENAGL+P+  + ++   H +     G++V +G+  ++LE  V+ P+ V   AI  A+E   MIL+IDD++
Sbjct:  418 LAIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKEKGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVI 522          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 40/106 (37.74%), Postives = 69/106 (65.09%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQIT-NILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            L+ +L  +A+++ G E+  + +FA+ALE IP  LAE AGL  ++ + +LR RHA+G  N+G++V  G+I  ++   N+++P+ V +  +  A E    ILKIDD++
Sbjct:  423 LAMKLREYARSVGGKEQLAIEAFADALEEIPLILAETAGLEAISSLMDLRARHAKGLSNTGVDVIGGKIVDDVYALNIIEPIRVKSQVLKSATEAATAILKIDDLI 528          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 40/106 (37.74%), Postives = 68/106 (64.15%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQIT-NILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 316
            L+ +L  +A+++ G E+  + +FA+ALE IP  LAE AGL  ++ + +LR RHA+G  N+G++V  G+I  ++   N+++P+ V    +  A E    ILKIDD++
Sbjct:  423 LAMKLREYARSVGGKEQLAIEAFADALEEIPTILAETAGLEAISALMDLRARHAKGLTNTGVDVIGGKIVDDVYALNIIEPIRVKAQVLKSATEAATAILKIDDLI 528          
BLAST of DR908861 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14
Identity = 38/106 (35.85%), Postives = 69/106 (65.09%), Query Frame = 2
Query:    2 LSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT 319
            +S +L   A+++ G+ ++  R+ A+A+E+IP TL +N G NP+  +TELR +HA+G+ + GI+   G++ ++ E  V +P  V   +I  A E   ++L++DDIV+
Sbjct:  416 VSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVS 521          
The following BLAST results are available for this feature:
BLAST of DR908861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
THS_PYRHO3.408e-1640.95Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THSB_THEK19.916e-1640.95Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSA_THEK19.916e-1637.04Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO9.916e-1637.04Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THS2_HALVO1.295e-1536.19Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THS_DESSY1.691e-1540.00Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSB_PYRKO2.209e-1540.00Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSA_SULSO6.427e-1537.74Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THSA_SULSH6.427e-1537.74Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
TCPG_SCHPO1.870e-1435.85T-complex protein 1 subunit gamma OS=Schizosacchar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16989 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-14_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908861 ID=DR908861; Name=DR908861; organism=Citrus sinensis; type=EST; length=570bp
GTTGTCAAGGCAGTTGGGAGCATGGGCAAAGGCATTGTCCGGCATGGAAA
GGTATTGTGTGAGGTCATTTGCAGAGGCACTTGAGGTTATTCCCTATACT
TTGGCTGAGAATGCTGGGTTGAACCCGCTTGCCATTGTGACTGAACTGAG
GAACAGGCATGCACAAGGGGAAATCAATTCTGGAATCAATGTGAGGAAGG
GGCAGATTACCAATATTTTGGAGGAGAATGTGGTGCAGCCACTGCTTGTG
AGCACAAGTGCAATAACACTGGCTGCAGAGTGTGTAAGGATGATTTTGAA
GATTGATGACATCGTTACTGTGAGGTAGTTTTGCATCCAAAGATGAAAGT
GTGTTCCCTACTTATGTTTTGCGTCCTTGTATTATCTGAATTAGTAAGCT
CTGTTTTAGGATTGATTGCTGTTAAGAGTTTTGACTTTGTTATTTTTGTT
GCCAAATATTTGGTTTGAATTTGCTGTTTTATGGTTAATTAGCAGTCGAA
TGACTGATTAACTACTATTTCAGCCTTTATATGTTTTACCTTGTGAGAAG
CTCTAATCAGATCTATGCTT
back to top