DR908853

Overview
NameDR908853
Unique NameDR908853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.807e-17
Identity = 50/124 (40.32%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  222 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGR-----------NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRI 560
            +KLF RW +EDV V D  L DYI ++       +P++ GR+   RF KA+ PI+ERL   LM  G              GKK  A +I+    EII   T QNP++V V A+ N+ PRE+ T I
Sbjct:    3 MKLFGRWDYEDVTVEDPGLRDYINLKPM----LIPYSGGRHQKHRFGKAKIPIIERLAGRLMTSGHLGKKHKWTSEHQTGKKYNAYKIIIRTFEIIEKRTKQNPLKVFVKAIENAAPREETTTI 122          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.082e-17
Identity = 53/120 (44.17%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  228 LFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMH---------GRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRI 560
            LF +W   D++V D  L   I ++       +P+T GR ++KRF KA   IVERL N  MMH         GR  GKK+ ++  VK A EII+L T +NP++V+V AV NS P ED TRI
Sbjct:    9 LFRKWDLSDIEVVDPGLKTAISLRKMT----LPYTYGRSALKRFNKADANIVERLANK-MMHFGKKYAKNTGRMAGKKMGSINTVKTAFEIINLKTGRNPVEVLVRAVENSAPNEDTTRI 123          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.968e-17
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  198 DPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRI 560
            D      + KLF  W   +++  D S   YI V      T + HT GR++ K+F K++  +VERL N LM    N G K   + IV+ A + IH  T++NP+QV+V  V N+ PRE+  R+
Sbjct:   37 DTDTASANAKLFGEWDVSEIEYEDPSTQRYITV------TPIAHTMGRHAAKQFEKSKISVVERLINRLMQTEDNTGHKQKTMNIVEDAFDTIHNRTEENPVQVLVRGVENAAPREETVRL 151          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.592e-16
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 3
Query:  228 LFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRI 560
            LFN++    V+++D  +  YI V++A N     HT GR+S     K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ TR+
Sbjct:    2 LFNKYDVNAVEIHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVTRL 108          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.916e-16
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 3
Query:  228 LFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRI 560
            LF+++    V+V+D  +  YI V++A N     HT GR+S     K    +VERL N LM   +  GKK  A +I K A +II   T QNP+Q++++A+ N+GPRE+ TR+
Sbjct:    2 LFDKYDVNSVEVHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRTEKWTGKKYSAYKITKDAFDIIADKTKQNPLQILINAIENAGPREEVTRL 108          
BLAST of DR908853 vs. ExPASy Swiss-Prot
Match: RS7_PICTO (30S ribosomal protein S7P OS=Picrophilus torridus GN=rps7p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.295e-15
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 3
Query:  219 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRI 560
            D  +  ++    +Q++D+ L+ YI +    N+ +  HT GRYS     K     +ERL N LM   +  GKK  A R++K A EI+   T QNP+QV+++A+ NS PRE+ TR+
Sbjct:    2 DRLIMGKYDVSGIQIHDMGLAKYINL----NSYFNLHTGGRYSNYSAGKRNVNTIERLLNKLMRTEKWTGKKYSAYRVLKEAFEIVEQKTKQNPVQVLINAIENSAPREEVTRL 111          
The following BLAST results are available for this feature:
BLAST of DR908853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_NANEQ1.807e-1740.3230S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]
RS7_CENSY3.082e-1744.1730S ribosomal protein S7P OS=Cenarchaeum symbiosum... [more]
RS7_HALWD8.968e-1737.1930S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_THEAC7.592e-1639.6430S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_THEVO9.916e-1640.5430S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]
RS7_PICTO1.295e-1537.7230S ribosomal protein S7P OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16981 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-10_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908853 ID=DR908853; Name=DR908853; organism=Citrus sinensis; type=EST; length=571bp
GAACTCAGCGAGCGGCAGCCGATTCTTATTATTCCCTTTTCAAACCCCTT
CAGACAAACTAACGCACGCTTTCTTTTTCTTCCGCTTTCTTCTCCATCGC
TGATCATCTTGATTGCTTTTTTAGTTCGAAAAACATTGTCTTTTAATATT
TTGTTGTGTTGGTGAGAATGGCGACTGCTGTAGTGACACAATCTCAAGAC
CCATCACAGCCTCAATACGATGTGAAACTCTTCAATAGGTGGACTTTCGA
GGATGTTCAGGTCAATGACATTTCATTGAGTGATTATATTGGAGTCCAAG
CAGCAAAAAATGCAACCTATGTACCTCACACAGCTGGGAGGTACTCAGTG
AAGCGGTTTAGGAAGGCACAGTGCCCAATTGTTGAGAGGCTCACAAACTC
ACTGATGATGCATGGAAGAAACAATGGCAAGAAATTGATGGCCGTCAGGA
TTGTCAAGCACGCCATGGAAATCATTCACCTTTTGACCGACCAGAACCCA
ATTCAGGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGACGC
TACCCGCATTGGATCTGCTGG
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