CN189727

Overview
NameCN189727
Unique NameCN189727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189727 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.834e-26
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  152 MAVYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSV-DQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            MA YK+ LI  + G     E  +DQ ILDA EEAG+DLP SCRAG+CSTCAGKLVSG+  +Q D +FLDD+Q+ AG+++TC++YPT DC I +H+E E+
Sbjct:    1 MATYKVTLINEEEGINAILEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of CN189727 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 2
Query:  161 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            YK+ L  P G+   F+ +  + ++D A E   DLP SC+AGACSTC GK+VSG+VDQS+GSFLDD Q+E GY+LTCI+ P SD VI++HKE+EL
Sbjct:    2 YKVTLKTPDGDI-TFDVEPGERLIDIASEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CN189727 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.719e-23
Identity = 53/94 (56.38%), Postives = 70/94 (74.47%), Query Frame = 2
Query:  161 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            YK+ L  P G+   F+ +  + ++D   E   DLP SC+AGACSTC GK+VSG+VDQS+GSFLDD Q+E GY+LTCI+ P SD VI++HKE+EL
Sbjct:    2 YKVTLKTPDGDI-TFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CN189727 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 8.533e-23
Identity = 49/98 (50.00%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  152 MAVYKIKLIGPKGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            MA Y+++LI  K + +   E  E+  ILD AEE G++LP+SC +G+CS+C GK+V G VDQSD  FLDD QM  G+ L C++YP S+C I++H+E  L
Sbjct:    1 MASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CN189727 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.114e-22
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  152 MAVYKIKLIGPKGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            MA Y+++LI  K + +   E  ED  IL+ A E G++LP+SC +G+CS+C GK+V G VDQSD  FLDD QM  G+ L C++YP S+C I++H+E  L
Sbjct:    1 MATYQVRLINKKEDLDSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CN189727 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.483e-22
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  152 MAVYKIKLIGPKGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            MA Y+++LI  K   +   E  E+  ILD AEE G++LP+SC +G+CS+C GK+V G VDQSD  FLDD Q+  G+ L C++YP S+C I++H+E  L
Sbjct:    1 MATYQVRLISKKENIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CN189727 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.232e-21
Identity = 45/98 (45.92%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  152 MAVYKIKLIGPKGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            MA Y+++LI  K   +      ED  +L+AAEEA +DLP+SC +GACS+C GK+V G ++Q D +FLD+ Q+  G++L C++YP +DC I++H+E  L
Sbjct:    1 MATYQVRLINKKRNLDITLPVDEDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          
BLAST of CN189727 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.324e-20
Identity = 44/98 (44.90%), Postives = 67/98 (68.37%), Query Frame = 2
Query:  152 MAVYKIKLIGPKGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            M  Y+++LI  K   +      E+  ILDAAE+  ++LP+SC++G+CS+C  K+V G VDQS+  FLD+ QM  G+++ C+SYP SDC I++H+E  L
Sbjct:    1 MTTYQVRLINKKRAIDITIPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          
BLAST of CN189727 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.176e-20
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  152 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 442
            MA Y++++I  +G+   F A  DQ +LD+A+ AGVDLP SC  G C+TCA +++SG VDQ D   +     + GY L C++YP SD  I++HKE+EL
Sbjct:    1 MATYQVEVIY-QGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          
The following BLAST results are available for this feature:
BLAST of CN189727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA2.834e-2657.58Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_EQUTE5.909e-2457.45Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FER2_EQUAR1.719e-2356.38Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_ANASP8.533e-2350.00Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERH_FREDI1.114e-2248.98Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERH_ANAVT2.483e-2248.98Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_PLEBO1.232e-2145.92Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FERV_ANAVT2.324e-2044.90Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER2_SYNP65.176e-2046.39Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189727 ID=CN189727; Name=CN189727; organism=Citrus sinensis; type=EST; length=656bp
CAGTGTGACACTTAGCGCCCCGTGCATGGTTAAAGCTGCACCCAGAAATC
AACTATCAAGGAACTTAATCAAGAGCCCAACCTCACTTGGATCTGTTAAG
GGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAATTTCCAAGCATC
AATGGCTGTCTACAAGATTAAGCTGATTGGACCTAAGGGTGAAGAGCATG
AGTTTGAGGCCCAGGAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCA
GGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGC
TGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCG
ATGACAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCATACCCG
ACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGT
GCCTTTGCTGTCAGTTGGTTTAGGGTTTTTCAAGTATGAACTGTGATCAA
GTGCCTGAGTATGCTGATAAGGTTTCTCATGGGCCTACAATATTTTTTAG
ATTTCAGCGTGTTGTCTGGTGCAATGGAATCTGTAATTTTTCATTTAGTT
ATACTATTACTGGCATTTTGGGATTTCATTTCATGTGAAAGGGTGTATAA
TTTCTC
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