CN189726

Overview
NameCN189726
Unique NameCN189726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.419e-25
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = 3
Query:  156 EHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            E E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+ SG +D SD SFLDD+Q+ AG +LTC +YP SD VI++HKE++L
Sbjct:   56 EVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.161e-25
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 3
Query:  162 EFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            EF   +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VD SDG+FLDD+Q+  G +LTC++YP SD  I++HKEE+L
Sbjct:   15 EFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.128e-25
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 3
Query:  162 EFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VD SDG+FLDD+Q+  G +LTC++YP SD  I++HKEE L
Sbjct:   15 EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEAL 95          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.391e-25
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 3
Query:  162 EFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            EF   +D YILD+AEE G DLPYSCRAGACS+CAGK+ +G+VD SD SFLDD+Q+  G +LTC++YP S+  I++HKE++L
Sbjct:   15 EFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDL 95          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.391e-25
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 3
Query:  162 EFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            EF   +D YILD AEE G DLPYSCRAGACS+CAGK+  GSVD SD SFLDD+Q+  G +LTC++YP S+  I++HKEE L
Sbjct:   15 EFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEAL 95          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.041e-25
Identity = 47/76 (61.84%), Postives = 65/76 (85.53%), Query Frame = 3
Query:  177 EDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            +D Y+LDAAEEAG+DLPYSCRAG+CS+C GK+ +G+VD  D SFLDD+Q+EAG +LTC+++P  D  I++HKEE++
Sbjct:   20 DDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.201e-24
Identity = 47/83 (56.63%), Postives = 69/83 (83.13%), Query Frame = 3
Query:  156 EHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            +   E  +D+YILDAAEEAG+DLP+SCR+G+CS+C G L+ G+VD SD +FLDD+Q+ AG +LTC++YPTS+C I++H+E+ +
Sbjct:   16 DETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAI 98          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.049e-24
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 3
Query:  156 EHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            E   E  +D++ILDA EEAG+DLPYSCRAGACS+C GKL  G VD S+ SFLDD+QM  G +LTC++YP  D  I++H EE+L
Sbjct:   13 ERTIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.864e-23
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 3
Query:  153 EEHEFEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            EE E E +ED  IL++AE AG++LPYSCR+G C TC GKL SG VD S GSFL++ Q++ G +LTCI+ P  DCV+ +HK+ +L
Sbjct:   64 EEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
BLAST of CN189726 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.046e-23
Identity = 49/80 (61.25%), Postives = 62/80 (77.50%), Query Frame = 3
Query:  165 FEAHEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLESGSVDHSDGSFLDDNQMEAG*LLTCISYPTSDCVIQSHKEEEL 404
            FE   D YILD AEE G++LPYSCRAG+CS+CAGK+ +GS+D SD +FLDD+Q   G  LTC++YPTSD  I++H E EL
Sbjct:   14 FECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
The following BLAST results are available for this feature:
BLAST of CN189726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_ORYSI1.419e-2562.65Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_HYONI3.161e-2561.73Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_LYCCN4.128e-2561.73Ferredoxin OS=Lycium chinense PE=1 SV=1[more]
FER_SOLLY5.391e-2561.73Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_SOLLS5.391e-2564.20Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER1_PHYAM7.041e-2561.84Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER2_NOSMU1.201e-2456.63Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER_GLEJA2.049e-2460.24Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER4_ARATH3.864e-2355.95Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER_PERBI5.046e-2361.25Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189726 ID=CN189726; Name=CN189726; organism=Citrus sinensis; type=EST; length=408bp
ACCCAGACATCAACTATCAAGGAACTTAATCAAGAGGCCTAACCTCACTT
GGATCTGTTAAGGGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAA
TTTCCAAGCATCAATGGGTGGGTAGAAGATTAAGCTGATTGGACCTAAGG
GTGAAGAGCATGAGTTTGAGGCCCATGAAGACCAGTACATCCTCGATGCA
GCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTG
CTCGACGTGTGCTGGGAAGTTGGAGTCTGGTTCAGTTGACCACTCAGATG
GTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTAGCTGCTGACTTGC
ATTTCATACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGA
GCTTTGCT
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