DR908850

Overview
NameDR908850
Unique NameDR908850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP7C_ICTPU (Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAEKYKAED+  + KV AKN LE+YA+NM++TV+DEK+  K+   DK KI D  ++ I WLD NQ AE DE+E + K+LE +CNPII K+YQ
Sbjct:  521 EAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLKGKISDEDKHKILDKCNEVISWLDKNQTAEKDEYEHQQKDLEKVCNPIITKLYQ 612          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAE+YK+EDE ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  524 EAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAE+YK+EDE ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  524 EAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAE+YK+EDE ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  524 EAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISDQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAE+YK+EDE ++ +V AKNA+E+Y YN++ TV+DEK+  K+   DK KI D   + I WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  524 EAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISDQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.804e-26
Identity = 51/91 (56.04%), Postives = 72/91 (79.12%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 275
            EAEKYKAEDEE   ++ ++NALE+YAYN+RN++ DEK+  K D ADKKK+EDA++  I WLD++Q A  +E+E+  KELE++ NPI+ K+Y
Sbjct:  519 EAEKYKAEDEEATARITSRNALESYAYNLRNSLTDEKLADKFDAADKKKLEDAVNSTISWLDNSQEASKEEYEEHQKELEAVANPIMQKLY 609          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP70_BLAEM (Heat shock 70 kDa protein OS=Blastocladiella emersonii GN=HSP70 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.195e-26
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 275
            EAEKYK EDEE   +++AKN LE+YAYN+RNT+ D+K+  K+D ADK+ +  AID+ I WLD NQ    DE+E K KELE + NPI+ K+Y
Sbjct:  524 EAEKYKKEDEEAASRIQAKNGLESYAYNLRNTLNDDKVAGKMDAADKETLNKAIDETISWLDGNQEGAKDEYEHKQKELEGVANPIMTKLY 614          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HSP70_HYDMA (Heat shock 70 kDa protein OS=Hydra magnipapillata GN=HSP70.1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.070e-25
Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAEKYKA+DE  + KV+AKN+LE+Y YNM+ TV+DEK+  K+   DKK I    ++ ++W+D NQ AE D++E K KELE +CNPII K+YQ
Sbjct:  528 EAEKYKADDELQRDKVQAKNSLESYCYNMKQTVEDEKVKGKISEEDKKTIIKKCNETVEWVDKNQTAEKDQYEHKQKELEKVCNPIITKLYQ 619          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.070e-25
Identity = 52/92 (56.52%), Postives = 72/92 (78.26%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            EAE+YKAEDE  ++K+ AKNALE+YA+NM++ V DE +  K+  +DKKKI D   + + WL++NQLAE +EF+ K KELE++CNPII K+YQ
Sbjct:  523 EAERYKAEDEGQREKIAAKNALESYAFNMKSAVGDEGLKDKISESDKKKILDKCSEVLSWLEANQLAEKEEFDHKRKELENMCNPIITKLYQ 614          
BLAST of DR908850 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.070e-25
Identity = 52/92 (56.52%), Postives = 71/92 (77.17%), Query Frame = 3
Query:    3 EAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ 278
            +AEKYKAEDE  ++K+ AKNALE+YA+NM++ V DE +  K+  +DKKKI    ++ + WL++NQLAE DEF+ K KELE +CNPII K+YQ
Sbjct:  523 DAEKYKAEDEVQREKIAAKNALESYAFNMKSAVSDEGLQGKISESDKKKILSKCNEVLLWLEANQLAEKDEFDHKRKELEQVCNPIITKLYQ 614          
The following BLAST results are available for this feature:
BLAST of DR908850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
HSP7C_ICTPU4.804e-2657.61Heat shock cognate 71 kDa protein OS=Ictalurus pun... [more]
HSP72_RAT4.804e-2656.52Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_MOUSE4.804e-2656.52Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HSP72_CAPHI4.804e-2656.52Heat shock-related 70 kDa protein 2 OS=Capra hircu... [more]
HSP72_BOVIN4.804e-2656.52Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]
HSP71_PUCGR4.804e-2656.04Heat shock protein HSS1 OS=Puccinia graminis GN=HS... [more]
HSP70_BLAEM8.195e-2656.04Heat shock 70 kDa protein OS=Blastocladiella emers... [more]
HSP70_HYDMA1.070e-2555.43Heat shock 70 kDa protein OS=Hydra magnipapillata ... [more]
HS71L_RAT1.070e-2556.52Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_BOVIN1.070e-2556.52Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16978 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-38_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908850 ID=DR908850; Name=DR908850; organism=Citrus sinensis; type=EST; length=572bp
AAGAGGCCGAGAAGTACAAGGCTGAAGACGAGGAGCACAAGAAGAAGGTC
GAGGCCAAGAATGCCTTGGAAAACTATGCCTACAATATGAGGAACACTGT
CAAGGACGAGAAGATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGA
TTGAGGATGCCATTGATCAGGCAATTCAATGGCTTGATAGCAACCAGCTG
GCTGAGGCCGATGAATTTGAAGACAAGATGAAGGAGCTTGAGAGCATCTG
CAATCCCATCATTGCCAAGATGTATCAAGGTGCTGGTGGTGATATGGGCG
GTGGCATGGATGATGATGCTCCTCCAGCTGGTGGCAGTGCCGCCGGTCCC
AAGATTGAGGAAGTTGACTAAGCTTCCAGTTTTATTTTGTTGTGTTTGTG
GGAGGTCGGTTTTTTGACGGTGGGAAAACTGGACGTTTGGTTTTTATCTT
ATGTTGTTTTAGCCTTAGGATGAATATTAATTTTTCCTTTTCTTTTTATT
TTTCAAATTTTACTTTTAATTCGGACCAATTTATATAATGAATATTTTTT
CGGTCCCTAAAAAAAAAAAAAA
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