DR908836

Overview
NameDR908836
Unique NameDR908836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908836 vs. ExPASy Swiss-Prot
Match: V011_FOWPV (Soluble NSF attachment protein homolog FPV011 OS=Fowlpox virus GN=FPV011 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.058e-17
Identity = 48/165 (29.09%), Postives = 91/165 (55.15%), Query Frame = 1
Query:    7 FKLAKSWDKAGATYVKLANCHL-KLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 495
            F   + W+ AG  + K  +  L K ++   AA ++VDAA+ +KK  S EAI+CL +A+ ++  +G+    AR +  IA +YE++   +++ I  +E A+  +  E     ++ C   +A+ + + E + ++ +I+E++    +N  L KY  +  LL A +C LC
Sbjct:   36 FASVQLWECAGKAFFKSGDMLLQKNKNSIAAASSFVDAANAFKKIDSYEAINCLSKAIEVYTCLGKFYTVARCHMNIAAIYENDILELDKAIFHYENASGYYGGEGYNKLSDDCMLLIARLSIQKEDFDRAGKIFEQVGYNRMNTMLSKYESRHQLLYAIMCYLC 200          
BLAST of DR908836 vs. ExPASy Swiss-Prot
Match: SEC17_ASHGO (Vesicular-fusion protein SEC17 OS=Ashbya gossypii GN=SEC17 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 47/170 (27.65%), Postives = 86/170 (50.59%), Query Frame = 1
Query:    7 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVA 513
            ++L+K    AG T+ K A C ++  ++ EA   +V+A  CYK  +   A   LE+A+ +F   G+    A +  E+AE+ E++  +  +    +E A D +  ++    +N+   K A   A  E+Y  + E+Y +I   S+ N L ++ ++ + L   +C L   D VA
Sbjct:   47 YRLSKELSAAGDTFWKAAECQVEAGNEDEAGNTFVEAYKCYKGANPERACEALERAIAIFTRKGQFRRGAYFKFELAEVQETDLQDYGRARENYELAGDWYMQDQALALSNKAYIKCADLNALDEKYLAAAELYRKIISNSVGNRLSQWSLRDYYLKLCLCFLAASDTVA 216          
The following BLAST results are available for this feature:
BLAST of DR908836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
V011_FOWPV5.058e-1729.09Soluble NSF attachment protein homolog FPV011 OS=F... [more]
SEC17_ASHGO2.125e-1527.65Vesicular-fusion protein SEC17 OS=Ashbya gossypii ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16964 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-14_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908836 ID=DR908836; Name=DR908836; organism=Citrus sinensis; type=EST; length=559bp
CCGTCCTTCAAGCTCGCCAAATCATGGGATAAAGCTGGAGCAACTTATGT
TAAGTTGGCAAACTGTCATTTAAAGTTGGAAAGCAAACATGAAGCTGCTC
AAGCTTATGTTGATGCTGCCCACTGCTATAAGAAAACATCTTCAAATGAG
GCCATATCTTGCTTAGAACAGGCTGTAAATATGTTTTGTGACATTGGAAG
GCTCAGTATGGCTGCAAGATATTATAAGGAAATTGCTGAGCTGTATGAAT
CTGAGCACAACATTGAACAGACTATTGTTTTCTTTGAGAAGGCAGCTGAT
ATGTTCCAAAATGAAGAAGTAACAACTTCTGCTAACCAGTGCAAGCAGAA
AGTTGCACAATATGCTGCTGAATTGGAACAATATCACAAGTCAATTGAGA
TTTATGAAGAGATTGCTAGGCAGTCTCTCAACAACAACTTGTTGAAATAT
GGAGTGAAAGGACATCTTCTTAATGCTGGCATATGCCAACTTTGCAAGGG
TGATGTTGTTGCATTACCAACGCATTGGAGCGATACCAGGACATGGATCC
TACCTTTTT
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