DR908833

Overview
NameDR908833
Unique NameDR908833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DDX3_DICDI (Probable ATP-dependent RNA helicase ddx3 OS=Dictyostelium discoideum GN=ddx3 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.182e-30
Identity = 65/105 (61.90%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    4 TTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTR 318
            T IHGD TQ ERE AL+SF+S  TP LVATD+A+RGL I +V  V+NFDLP DI  YVHRIGRTGRAGK GLA +FFNE N  +   L +LM+ SNQ++P W  +
Sbjct:  532 TCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDIPDWFEK 636          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 58/107 (54.21%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRY 321
            A  IHGD+ Q ER+  L  F+SG++PI+VATDVAARG+D+  + +V+N+D+P +I+DYVHRIGRTGRAG +G A +FF E N SL   L ++M+E+ Q++P  L RY
Sbjct:  387 ALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGSTGTAISFFTEGNKSLGAALIKIMREAKQDIPEELRRY 493          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.217e-29
Identity = 60/111 (54.05%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRA 333
            A  IHGD+ Q ER+  L  F+ GKT I+VATDVAARG+D+  + HV+N+D+P +I+DYVHRIGRTGR G SG A +FF E N  L   L ++M+E+NQ VP  L R+  R+
Sbjct:  401 ALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQTVPPELQRFDRRS 511          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.589e-29
Identity = 57/111 (51.35%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRA 333
            A  IHGD+ Q+ER+  L+ F++G++PI+VATDVAARG+D+  + +V+N+D+P +I+DYVHRIGRTGRAG +G A +FF E N  L   L  +M+E+NQ +P  L +Y  R+
Sbjct:  387 ALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYDRRS 497          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.589e-29
Identity = 57/111 (51.35%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRA 333
            A  IHGD+ Q+ER+  L+ F++G++PI+VATDVAARG+D+  + +V+N+D+P +I+DYVHRIGRTGRAG +G A +FF E N  L   L  +M+E+NQ +P  L +Y  R+
Sbjct:  387 ALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYDRRS 497          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 7.886e-29
Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLT 315
            A  IHGD+TQ ER+  L  FKSG++PI+ ATDVAARGLD+  +  VVN+D PN ++DY+HRIGRTGRAG  G+A  FF  +N   AR L +++QE+ Q VP  L+
Sbjct:  437 ALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLS 541          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.030e-28
Identity = 58/110 (52.73%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASR 330
            A  IHGD+ Q+ER+  L  F++G +PI+VATDVAARG+D+  +  VVN+D+P +I+DYVHRIGRTGRAG +G A +FF E+N SL   L  +M+E+ Q +P  L +Y  R
Sbjct:  384 ALAIHGDKDQRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEDNKSLGASLISIMREAKQNIPEELMKYDRR 493          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.345e-28
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRY 321
            A  IHGD+ Q ER+  LR FK+GK+PI+VATDVAARG+D+  +  V+NFD+P +I+DYVHRIGRTGR G +G A +FF + N  L   L ++M+E+ Q +P  L R+
Sbjct:  371 ALAIHGDKQQSERDWVLREFKTGKSPIMVATDVAARGIDVKGINFVINFDMPGNIEDYVHRIGRTGRGGATGTAVSFFTDGNNKLGGDLCKIMREAKQTIPPELQRF 477          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.997e-28
Identity = 58/110 (52.73%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASR 330
            A  IHGD++Q ER+  L  F+SG+TP+LVATDVAARGLD+  +  VVN+D PN ++DYVHRIGRTGRAG +GLA  FF + +   A  L ++++ +NQ+VP  +   A+R
Sbjct:  432 AAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATR 541          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DDX17_DROME (ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 8.719e-28
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   10 IHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            IHGD++Q ER+  LR F+SGK+ ILVATDVAARGLD+  + +V+NFD P + +DY+HRIGRTGR+   G + AFF +NN   A+ L ++++E+NQE+   L   A  + Y
Sbjct:  560 IHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNSRY 669          
The following BLAST results are available for this feature:
BLAST of DR908833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX3_DICDI4.182e-3061.90Probable ATP-dependent RNA helicase ddx3 OS=Dictyo... [more]
DBP2_KLULA7.133e-3054.21ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]
DBP2_CANAL1.217e-2954.05ATP-dependent RNA helicase DBP2 OS=Candida albican... [more]
DBP2_YEAST1.589e-2951.35ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS71.589e-2951.35ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
RH30_ARATH7.886e-2955.24DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
DBP2_CANGA1.030e-2852.73ATP-dependent RNA helicase DBP2 OS=Candida glabrat... [more]
DBP2_PICST1.345e-2853.27ATP-dependent RNA helicase DBP2 OS=Pichia stipitis... [more]
RH46_ARATH2.997e-2852.73DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
DDX17_DROME8.719e-2850.91ATP-dependent RNA helicase p62 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16961 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-06_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908833 ID=DR908833; Name=DR908833; organism=Citrus sinensis; type=EST; length=573bp
GCAACTACTATTCATGGGGACAGAACACAACAGGAAAGGGAACTAGCATT
GAGATCATTTAAGAGTGGAAAGACACCAATTTTAGTAGCTACTGATGTGG
CGGCACGTGGTCTTGATATACCGCATGTGGCTCATGTAGTCAACTTTGAT
CTCCCTAATGACATTGATGATTATGTACATCGGATAGGAAGGACAGGACG
AGCTGGGAAATCAGGATTGGCTACAGCCTTTTTTAACGAGAACAATTTGT
CATTGGCAAGGCCTCTAGCTGAGCTAATGCAAGAATCTAATCAGGAAGTA
CCTGCTTGGCTTACTCGTTACGCATCACGGGCTAATTATGGCGGTGGCAA
AAATAAGCGATCTGGAGGAAACCGTTTTGGTGGTCGTGACTTCAGAAGAG
ATGGCTCATTTACTAGAGGCACATCTAATGACTTTTACAGTGGAGTGAAT
AGTAGTAGCAATGCATATGGGGTTCCAGGTGGTGGATATGGTGGGGGATA
TGGTTATAGCATCCTGGTGTGACCAGTGCATGGGATTAAGATCCCCACCT
TACACTGAAATGTCTTTACAACT
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