DR908828

Overview
NameDR908828
Unique NameDR908828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.230e-14
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:    9 NLKKTCPT-SDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDL-YTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKN 302
            +L++ C T   S   T  D+ +P+ FDN+YYV+L++ +GLL SDQ L   D  TR+IV ++A DQS+FF++F N+M+KM    +  G   EIR  C + N
Sbjct:  251 SLQQLCSTVGPSVGITQLDLVTPSTFDNQYYVNLLSGEGLLPSDQALAVQDPGTRAIVETYATDQSVFFEDFKNAMVKMG--GIPGGSNSEIRKNCRMIN 348          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER16_ARATH (Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.230e-14
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 3
Query:    3 ANNLKKTCPTS-DSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKN 302
            A  L++ CP   D       D  SPN FDN Y+ +L    GL TSDQ L++D+R+RS V SFA  ++ F Q F +++ K+ ++ V TG  GEIR  C+  N
Sbjct:  223 ALQLRQMCPIRVDLRIAINMDPTSPNTFDNAYFKNLQKGMGLFTSDQVLFSDERSRSTVNSFASSEATFRQAFISAITKLGRVGVKTGNAGEIRRDCSRVN 323          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER4_ARATH (Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 3
Query:   15 KKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLY-TDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKN 302
            K+ CP +  + T    D  +PN FDN YY +LM ++GLL SDQ L+ T   T SIVT ++ + S F  +F+ +MIKM  +  LTG  G+IR  C+  N
Sbjct:  218 KRRCPVNGGDTTLAPLDQVTPNSFDNNYYRNLMQKKGLLESDQVLFGTGASTDSIVTEYSRNPSRFASDFSAAMIKMGDIQTLTGSDGQIRRICSAVN 315          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER36_ARATH (Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 3
Query:    3 ANNLKKTCPTSDSN-NTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDK-RTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKC 290
            A+ L++ CP S ++ N    D  +P  FDN YY +L+N +GLL+SD+ L+T    T  +V  +A ++  FF++FA SM+KM  +S LTG  GEIR  C
Sbjct:  240 ASMLQQGCPISGNDQNLFNLDYVTPTKFDNYYYKNLVNFRGLLSSDEILFTQSIETMEMVKYYAENEGAFFEQFAKSMVKMGNISPLTGTDGEIRRIC 337          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER62_ARATH (Peroxidase 62 OS=Arabidopsis thaliana GN=PER62 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 3
Query:   12 LKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKN 302
            L++ CP +   +  V  D  S N FD  Y+++L   +G+L SD  L+T   TRSIV  F   +  F  +FA SM+KMS + V TG  GEIR  C+  N
Sbjct:  222 LQRLCPQNGDGSARVDLDTGSGNTFDTSYFINLSRNRGILQSDHVLWTSPATRSIVQEFMAPRGNFNVQFARSMVKMSNIGVKTGTNGEIRRVCSAVN 319          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER58_ARATH (Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   12 LKKTCPTS-DSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLY--TDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKC 290
            L++ CP   D       D  SP+ FDN Y+ +L N +G++ SDQ L+  T   T S+V  FA +Q+ FF  FA SMIKM  + +LTG++GEIR  C
Sbjct:  230 LRRQCPQGGDLTARANLDPTSPDSFDNDYFKNLQNNRGVIESDQILFSSTGAPTVSLVNRFAENQNEFFTNFARSMIKMGNVRILTGREGEIRRDC 325          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER50_ARATH (Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   12 LKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKN 302
            LK +CP +      +  D  +P  FDN YY +L   +GL TSDQ L+TD+R++  V  +A +  LF Q F NSMIK+ ++ V TG  G IR  C   N
Sbjct:  232 LKASCPRNIDPRVAINMDPTTPRQFDNVYYKNLQQGKGLFTSDQVLFTDRRSKPTVDLWANNGQLFNQAFINSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER46_ARATH (Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 3
Query:    3 ANNLKKTCPTSDSNNTTVF-DIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKN 302
            A  L   C +S+S++ TV  D  +  VFDN+YY +L   +GL  +D  L  D RTR++V   A D+  FFQ ++ S +K+S + V  G+ GEIR  C+  N
Sbjct:  226 AETLMNKCSSSESSSLTVSNDPETSAVFDNQYYRNLETHKGLFQTDSALMEDNRTRTMVEELASDEESFFQRWSESFVKLSMVGVRVGEDGEIRRSCSSVN 326          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   12 LKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYT--DKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNS 305
            L+  CP + +    V FD+ +PN FD +YY +L N +GL+ SDQ+L++     T  +V  ++ +   FF  F ++MI+M  L  LTG QGEIR  C V NS
Sbjct:  234 LRALCPQNGNGTVLVNFDVVTPNTFDRQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTFAFFGAFVDAMIRMGNLRPLTGTQGEIRQNCRVVNS 334          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.227e-13
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   24 CPTSDSNNTTVFDIRS----PNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNSNN 311
            CP S  +   V  +R+    P V DN YY ++++ +GLL  D  L  DKRTR IV   A DQ+ FF+EF  ++  +S+ + LTG +GEIR +C + N N+
Sbjct:  231 CPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330          
The following BLAST results are available for this feature:
BLAST of DR908828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PER40_ARATH3.230e-1443.00Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]
PER16_ARATH3.230e-1441.58Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=... [more]
PER4_ARATH5.510e-1442.86Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 ... [more]
PER36_ARATH5.510e-1442.86Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=... [more]
PER62_ARATH7.196e-1440.82Peroxidase 62 OS=Arabidopsis thaliana GN=PER62 PE=... [more]
PER58_ARATH7.196e-1443.75Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=... [more]
PER50_ARATH7.196e-1441.84Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=... [more]
PER46_ARATH7.196e-1439.60Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=... [more]
PER3_ARMRU7.196e-1440.59Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PER42_ARATH1.227e-1341.00Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16956 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908828 ID=DR908828; Name=DR908828; organism=Citrus sinensis; type=EST; length=574bp
TCGCCAACAATCTCAAAAAGACATGCCCCACTTCGGATTCCAACAACACC
ACCGTCTTCGACATCCGGTCCCCGAACGTGTTCGACAACAAGTACTACGT
TGACTTGATGAACCGACAGGGGTTGCTGACGTCGGACCAGGATCTTTACA
CGGACAAGAGAACGAGGAGCATTGTCACGAGCTTTGCTGTGGACCAGTCG
CTCTTCTTTCAAGAGTTTGCCAATTCGATGATAAAGATGTCGCAGTTGAG
TGTGCTCACGGGGAAGCAAGGAGAGATTAGAGCCAAGTGCGCCGTCAAGA
ATTCCAATAATTTGGCTTCTGTTGTTGAGGATGTAATTGAAGAGGCTTGG
TCTGGGATTATCTAAAATCTAGCTACCCCCCTCGCTTCAGGTTCAGGTTA
ACGTTGCTTGTTTCTTTGTGTTAATCTGTTTTGTTAATGTTTCGTTGTCT
TGCTCGCGCTTGTCTAGTTTGAATTCTGTCAATAAAGCTACTTGCTAGTT
AATATATATGTCCACTAGTAATCAAATTAGTAATTCTAAATAATCTCTGG
CTACATGCATAAATAAAAAAAAAA
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