DR908827

Overview
NameDR908827
Unique NameDR908827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A2_HUMAN (Eukaryotic initiation factor 4A-II OS=Homo sapiens GN=EIF4A2 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.421e-32
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D+R+L DI+ FYN  +EE+P NVADL+
Sbjct:  325 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.421e-32
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D+R+L DI+ FYN  +EE+P NVADL+
Sbjct:  325 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.421e-32
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D+R+L DI+ FYN  +EE+P NVADL+
Sbjct:  325 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 5.835e-32
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINF+T DD R+L DI++FY+  IEE+PAN+ADL+
Sbjct:  321 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIEEMPANIADLI 403          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.217e-31
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFVT DD RML DI++FY+  I+E+P NVADL+
Sbjct:  329 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTSDDVRMLRDIEQFYSTQIDEMPLNVADLI 411          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.782e-31
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  316 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 398          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.782e-31
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.782e-31
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.782e-31
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.782e-31
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAIN VT +D+R L DI+ FYN  IEE+P NVADL+
Sbjct:  324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          
The following BLAST results are available for this feature:
BLAST of DR908827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A2_HUMAN3.421e-3279.52Eukaryotic initiation factor 4A-II OS=Homo sapiens... [more]
IF4A2_CHICK3.421e-3279.52Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
IF4A2_BOVIN3.421e-3279.52Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]
IF4A_DROME5.835e-3278.31Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A_USTMA2.217e-3179.52ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A1_RABIT3.782e-3179.52Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PONAB3.782e-3179.52Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
IF4A1_MOUSE3.782e-3179.52Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA3.782e-3179.52Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN3.782e-3179.52Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16955 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908827 ID=DR908827; Name=DR908827; organism=Citrus sinensis; type=EST; length=574bp
CGTGTGCTTATCACTACTGATCTCTTGGCACGTGGTATTGATGTCCAGCA
AGTGTCCCTGGTCATAAATTATGATCTTCCTACACAGCCAGAAAACTACC
TGCATCGTATAGGTCGTAGTGGACGATTTGGAAGAAAGGGTGTTGCCATT
AATTTCGTGACCAGGGATGATGAAAGGATGCTGTTTGATATTCAAAAGTT
TTACAATGTCGTAATTGAAGAGCTGCCAGCAAATGTTGCTGATCTCCTGT
GATGTGTTTTTGGATTGGTAAGGTGTTTTTGAAGTTTGAAGTCTAGTCAT
TATGGTGGGTCTGGAGTGGTTGCTAAAAGAACCCTACAATTATGGCATTT
GGAATGGCCTTTGTTTAAGTTTATGTTGCATCTGTTGTAGGTTTGCATTA
AATTATGTTGTTCTACACTTTTTTTTTAATTGTTGTGCGACATTATGTAG
AGTTGGAGCATGGCTAGTTTATTTGTCTTAGGAAAACTCGACTTGCTTGC
TTATTGCTTTTTAAAGTTATTTGGCTTGTTCTTTCATCTAATATAAACAA
GGCTGCATATTCAAAAAAAAAAAA
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