DR908827

Overview
NameDR908827
Unique NameDR908827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  316 RVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398
[Close]
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  314 RVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 396
[Close]
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  339 RVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 421
[Close]
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  316 RVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398
[Close]
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  316 RVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398
[Close]
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.202e-30
Identity = 62/83 (74.70%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFV+ +D+ ML +I+ +YN  +EE+P NVADL+
Sbjct:  319 RVLITTDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEIETYYNTQVEEMPLNVADLI 401
[Close]
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D RM+ +I++FY+  IEE+P NVADL+
Sbjct:  316 RVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFYSTQIEEMPMNVADLI 398
[Close]
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  316 RVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398
[Close]
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  316 RVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398
[Close]
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  316 RVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398
The following BLAST results are available for this feature:
BLAST of DR908827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_BOTFB2.452e-3077.11ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]
IF4A_ASPTN2.452e-3077.11ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
IF4A_ASPOR2.452e-3077.11ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]
IF4A_ASPNC2.452e-3077.11ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
IF4A_ASPCL2.452e-3077.11ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
IF4A_CRYNE3.202e-3074.70ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A_SCLS17.133e-3075.90ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
FAL1_NEOFI7.133e-3077.11ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_EMENI7.133e-3077.11ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
FAL1_ASPTN7.133e-3077.11ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16955 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908827 ID=DR908827; Name=DR908827; organism=Citrus sinensis; type=EST; length=574bp
CGTGTGCTTATCACTACTGATCTCTTGGCACGTGGTATTGATGTCCAGCA
AGTGTCCCTGGTCATAAATTATGATCTTCCTACACAGCCAGAAAACTACC
TGCATCGTATAGGTCGTAGTGGACGATTTGGAAGAAAGGGTGTTGCCATT
AATTTCGTGACCAGGGATGATGAAAGGATGCTGTTTGATATTCAAAAGTT
TTACAATGTCGTAATTGAAGAGCTGCCAGCAAATGTTGCTGATCTCCTGT
GATGTGTTTTTGGATTGGTAAGGTGTTTTTGAAGTTTGAAGTCTAGTCAT
TATGGTGGGTCTGGAGTGGTTGCTAAAAGAACCCTACAATTATGGCATTT
GGAATGGCCTTTGTTTAAGTTTATGTTGCATCTGTTGTAGGTTTGCATTA
AATTATGTTGTTCTACACTTTTTTTTTAATTGTTGTGCGACATTATGTAG
AGTTGGAGCATGGCTAGTTTATTTGTCTTAGGAAAACTCGACTTGCTTGC
TTATTGCTTTTTAAAGTTATTTGGCTTGTTCTTTCATCTAATATAAACAA
GGCTGCATATTCAAAAAAAAAAAA
back to top