CN189576

Overview
NameCN189576
Unique NameCN189576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189576 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.008e-38
Identity = 84/215 (39.07%), Postives = 129/215 (60.00%), Query Frame = 3
Query:   84 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGST 722
            M+ SK   ES   +   F S      +P++T+ +  +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KLM   + KN +D  EYP T EL+NRCVNIIA L++AP +  +  +G  T+GSSEA ML G+A K  W+ + +  G      KPN+V  +  QVCWEKF  Y++++++ V + + +  ++  + ++ VDE TI V  ILG T
Sbjct:    1 MLYSKENKES--YLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAPKD--QKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGIT 211          
BLAST of CN189576 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.232e-37
Identity = 80/198 (40.40%), Postives = 123/198 (62.12%), Query Frame = 3
Query:  135 FASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPF--DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVEMVDENTICVAAILGST 722
            F S      LP   M + S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE +++M   + KN +D  EYP T +L++ CVN++A L+N  +++SE  +G  TVGSSEA ML G+A K +W++     G      KP++V  +  QVCWEKF  Y+++EL+EV +SE +  ++    ++ VDE TI +  ILG T
Sbjct:   14 FGSFESGQDLPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGIT 209          
The following BLAST results are available for this feature:
BLAST of CN189576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISMO5.008e-3839.07Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO7.232e-3740.40Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189576 ID=CN189576; Name=CN189576; organism=Citrus sinensis; type=EST; length=725bp
GAGGATTAGCTCTCTGTACTCTCTCTGACACCAAAAGAAAAAAAAAATCA
TTATTAAATTTTGTTTGTTTTAATCTTTCAATCATGGTTCTTTCAAAGAC
ATTTTCCGAATCCGATGAGTCAATTCACTCCACCTTTGCCTCTCGCTACG
TCCGAAACTCTCTTCCTCGGTTCACGATGCCGGAGAACTCGATACCGAAG
GAGGCGGCGTACCAGATCATAAACGACGAGCTGATGCTCGACGGGAATCC
AAGATTGAACTTGGCTTCCTTCGTCACAACGTGGATGGAGCCTGAATGTG
ACAAGCTTATGATGGCTGCCATTAACAAGAACTACGTTGACATGGATGAG
TATCCTGTCACCACCGAGCTTCAGAATCGATGTGTGAACATTATAGCCCG
ACTGTTCAATGCTCCACTGGAGGACTCCGAGACGGCTGTCGGAGTTGGAA
CCGTAGGATCATCGGAAGCCATAATGTTGGCCGGCCTTGCATTCAAAAGA
AAGTGGCAGAACAAGCGCAAGGCTGAAGGAAAGCCCTTTGACAAACCCAA
CATTGTCACTGGAGCGAACGTTCAGGTCTGCTGGGAGAAATTTGCAAGGT
ATTTTGAGGTGGAGTTGAAGGAAGTGAAGCTGTCGGAAGGCTACTACGTG
ATGGACCCAGCCAAAGCTGTAGAAATGGTGGATGAAAACACTATCTGTGT
TGCTGCTATTCTGGGTTCTACTCTC
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