DR908781

Overview
NameDR908781
Unique NameDR908781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908781 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  110 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 454
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP D+ + GG++   I  P +YPFKPP     T   +    +   ICL I     E W P+ ++   L+++ + + T+PN
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of DR908781 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  110 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 454
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP ++ + GG++   I  P +YPFKPP     T   +    +   ICL I     E W P+ ++   L+++ + + T+PN
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of DR908781 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  110 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 454
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP ++ + GG++   I  P +YPFKPP     T   +    +   ICL I     E W P+ ++   L+++ + + T+PN
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of DR908781 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 38/117 (32.48%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  110 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 454
            A +RIL+E+KE+Q +P     + P  E++F WQ  I GP ++ + GG++   I  P +YPFKPP  +  T   +    +   ICL I     + W P+ ++   L+++ + + T+PN
Sbjct:    2 ATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILK---DQWSPALTISKVLLSICSLL-TDPN 114          
BLAST of DR908781 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  110 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPP--SFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 454
            A KRI +E++++Q +P     + P  +++F+WQ  I GP D+ F GG++   I  P +YPFKPP  +F     +    +   ICL I     E W P+ +V   L+++ + + T+PN
Sbjct:    2 ASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILK---EQWSPALTVSKVLLSICSLL-TDPN 114          
BLAST of DR908781 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  110 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 454
            A KRI +E+ ++  +P     + P+ E++F WQ  I GPGD+ + GG++   I  P +YPFKPP     T    PN    +   ICL I     + W P+ ++   L++ I  M T+PN
Sbjct:    2 AFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPN--INSNGSICLDILR---DQWSPALTISKVLLS-ICSMLTDPN 114          
BLAST of DR908781 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  116 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVALIAFMPTNPN 454
            K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+ PP+F  LT    PN  +ET   +C+SI   HP            E W P+ +VRT L+++I+ +   PN
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN-IYET-GDVCISIL--HPPVDDPQSGELPSERWNPTQNVRTILLSVISLL-NEPN 135          
BLAST of DR908781 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  116 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVALIAFMPTNPN 454
            K +L E+K +Q  P + F ++L  E +++ W+ AI GP +T +EGG +  R++ P +YP+ PP+F  LT    PN  +ET   +C+SI   HP            E W P+ +VRT L+++I+ +   PN
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPN-IYET-GDVCISIL--HPPVDDPQSGELPSERWNPTQNVRTILLSVISLL-NEPN 135          
BLAST of DR908781 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 42/156 (26.92%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  122 ILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTP--NGRFETQTKICLSI-----SNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDE 568
            +L E K +  NPS+ F     E+N+ EW   ++GP DT +EGG++  +I  P +YP++PP     +   +    +  K+C+SI     +      W P+  + T L+++I+ +      +  ++D  K  R+ L  +  E+ P       +K +DE
Sbjct:    6 LLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKSLDE 161          
BLAST of DR908781 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  128 QEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------PNGRFETQTKICLSISNHHP------------EHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEER 493
            +++KE+Q NP   F + L  +++IFEW+  I GP DT +EGG +H  +  P +YP  PP     T        PNG      ++C+SI   HP            E W P  S  T L+++I+ + +  + +  ++D  KE R
Sbjct:   12 KQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNG------EVCISIL--HPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFR 146          
The following BLAST results are available for this feature:
BLAST of DR908781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
UBC4_SOLLC4.306e-1434.19Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH5.624e-1433.33Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH7.345e-1433.33Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC29_ARATH1.636e-1332.48Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC30_ARATH8.121e-1333.33Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC1_COLGL8.121e-1334.45Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2R1_MOUSE8.121e-1335.38Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN8.121e-1335.38Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC_ASFM21.061e-1226.92Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC15_SCHPO1.385e-1231.47Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16909 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-04_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908781 ID=DR908781; Name=DR908781; organism=Citrus sinensis; type=EST; length=581bp
TTTTGTCTGCTCGTTCGCATACAAAGTCCTGATAGGACGGTGGACGTGAA
CCGATCGAAATCAGATCTGAAATCCAATGGCGGAAGACAGGTACAATTTG
AAAAATCCTGCGGTGAAGAGAATCCTACAGGAGGTCAAAGAGATGCAATC
AAATCCGTCAGATGATTTCATGAGCCTCCCTCTCGAGGAGAATATATTTG
AATGGCAATTTGCGATCAGGGGACCGGGTGATACTGAATTTGAAGGTGGG
ATTTATCATGGTCGGATTCAGTTGCCTGCGGAATACCCATTCAAGCCTCC
TTCATTTATGCTCTTAACACCAAATGGGCGTTTTGAAACTCAGACCAAAA
TATGCTTAAGCATTTCGAATCATCATCCGGAGCACTGGCAACCATCTTGG
AGTGTGAGGACTGCTCTTGTAGCACTAATTGCTTTCATGCCCACCAATCC
AAATGGTGCTTTGGGCTCACTAGATTATAAGAAGGAAGAGAGGCGTGCTC
TGGCCATCAAATCTCGTGAAGCTGCCCCAAAATTTGGGACTCCTGAACGT
CAAAAACTCATTGATGAGATCCATGAATATA
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