CN189564

Overview
NameCN189564
Unique NameCN189564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.956e-12
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = -2
Query:  412 GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 621
            G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  181 GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = -2
Query:  412 GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 621
            G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  181 GLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.268e-11
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = -2
Query:  412 GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 621
            G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  181 GLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKL 250          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.268e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -2
Query:  406 EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLAQ 609
            ++PG K+     +E  +V  T +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K LA+
Sbjct:  187 QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.268e-11
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = -2
Query:  427 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL 639
            ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L
Sbjct:  182 RKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAAL 251          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  406 GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLAQ 621
            G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++SG+KAA +AL+ LAQ
Sbjct:  192 GVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
The following BLAST results are available for this feature:
BLAST of CN189564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
THI4_PYRHO2.956e-1251.43Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB1.467e-1151.43Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU3.268e-1148.57Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAR4.268e-1147.06Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_AERPE4.268e-1147.89Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_METTP7.280e-1150.00Putative thiazole biosynthetic enzyme OS=Methanosa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002B04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189564 ID=CN189564; Name=CN189564; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTATTTTTTTTTTTTTTAAAAGGGAACAGCCCAAGGGCAGTCTTAC
ACATAACACAGATAACAAGGACTAGATACGCAACTGCAAATTCACCTCCG
AAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAG
GTTCCATGATGGACCGGAAACAAACACTTTATTCACAAAACCTCACAACA
TTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAATACAACT
ACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGATGATG
CCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAGCTGCAG
CTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCGTCTAATGCA
TTCGGCTGGGCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGA
TATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCACCATCAATCT
CGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCCTGGTC
AGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCC
AGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCCA
back to top