CN189562

Overview
NameCN189562
Unique NameCN189562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.142e-15
Identity = 25/50 (50.00%), Postives = 39/50 (78.00%), Query Frame = -3
Query:  280 KREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 429
            K++F  NG +V+DPE+G++IQLQGDQR  V  F++    ++K++IK+HGF
Sbjct:   59 KKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          

HSP 2 Score: 42.743 bits (99), Expect = 1.142e-15
Identity = 17/28 (60.71%), Postives = 24/28 (85.71%), Query Frame = -1
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            +  Y HIR+QQRNGRK+LT+VQG+ +E+
Sbjct:   22 TSNYIHIRIQQRNGRKTLTTVQGVPEEY 49          
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.261e-15
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = -3
Query:  280 KSSRTSKREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 447
            K  +  K++F  NGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   24 KLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          

HSP 2 Score: 31.9574 bits (71), Expect = 3.261e-15
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = -1
Query:  459 VQQRNGRKSLTSVQGLKKEF 518
            +QQRNGRK+LT+VQG+  ++
Sbjct:    1 IQQRNGRKTLTTVQGIADDY 20          
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.511e-15
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = -3
Query:  280 KREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 429
            +++F  NG +V+D E+G++IQLQGDQR  V  FL+    + K++IK+HGF
Sbjct:   59 RKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          

HSP 2 Score: 44.2838 bits (103), Expect = 5.511e-15
Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = -1
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            S  Y HIR+QQRNGRK+LT+VQG+ +E+
Sbjct:   22 SSNYIHIRIQQRNGRKTLTTVQGIPEEY 49          
The following BLAST results are available for this feature:
BLAST of CN189562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_YEAST1.142e-1550.00Eukaryotic translation initiation factor eIF-1 OS=... [more]
EIF1_CHICK3.261e-1553.57Eukaryotic translation initiation factor 1 (Fragme... [more]
SUI1_ASHGO5.511e-1548.00Protein translation factor SUI1 OS=Ashbya gossypii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189562 ID=CN189562; Name=CN189562; organism=Citrus sinensis; type=EST; length=542bp
TAGATGATAACTTTGGATAATAATTTGTACTTACAACCTATCGAGCAAAC
TATACTGCATCACATAACCATAATCATCCCACATTACATAAAACCGAGAA
CTAGGAAACATCAGTGGCACAAAAACAGATAAAACAATACTAAACCAACA
CAGGAGATGATATAACAGCACCACCACATACAAATTTTTTTTTTTTTAAT
AGTATCAATAGCATGTTCTGCACTGCACTGACGAACGCGGGTCACCAAAT
GTGCAGAAACGGAAGTTGCTGTTTACTTAAAAGCCATGCATTTTGATATG
TTCCTTCTTCACAATCCCAGCCTGAACAAGGAACGTAGATACATTCTTCC
GCTGGTCACCTTGGAGTTGAATGACCTGTCCTAGTTCAGGATCCTGGACC
ACTGTTCCATTGGAGCGAAATTCCCTTTTTGAGGTCCTTGAGGATTTTGT
TGGAACTAAAATTCTTTCTTCAACCCCTGGACAGATGTCAGGCTTTTCCT
ACCATTCCGTTGCTGAACACGGATATGCGCATACTCTTTTGA
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