CN189553

Overview
NameCN189553
Unique NameCN189553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189553 vs. ExPASy Swiss-Prot
Match: PFPI_PYRHO (Intracellular protease 1 OS=Pyrococcus horikoshii GN=pfpI PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 50/154 (32.47%), Postives = 72/154 (46.75%), Query Frame = 2
Query:  104 KVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCRDAVFDLIALPGGM-PGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACASTVESRVQQDGKVVTSRGP 562
            KVL   AN  E +E +     L+  G +V +AS E+   +   HG  +  D          FD + LPGG  P    L E  V  SI +K  S G   A++C  P + + + G+L+G K T YP   + +  A    V++ V  DG  V+SR P
Sbjct:    2 KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGT-ITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAV--SIARKMFSEGKPVASICHGPQILISA-GVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVP 151          
BLAST of CN189553 vs. ExPASy Swiss-Prot
Match: PFPI_PYRAB (Intracellular protease 1 OS=Pyrococcus abyssi GN=pfpI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 2
Query:  104 KVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCRDAVFDLIALPGGM-PGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACASTVESRVQQDGKVVTSRGPG 565
            +VL+  A+  E +E +     L+  G +V VAS ++ + +   HG  +  D    +     FD + LPGG  P    L E  V   I KK  S G   A++C  P + + + G+L+G + T YP   + +  A    V++ V  DG  V+SR PG
Sbjct:    2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGV-ITGKHGYTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAV--EIAKKMFSEGKPVASICHGPQILISA-GVLRGRRGTSYPGIKDDMINAGVDWVDAEVVVDGNWVSSRVPG 152          
BLAST of CN189553 vs. ExPASy Swiss-Prot
Match: PFPI_PYRKO (Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = 2
Query:  104 KVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCRDAVFDLIALPGGM-PGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACASTVESRVQQDGKVVTSRGPG 565
            KVL+  A+G E +E +  +  ++  G +V VAS ++  ++   HG  +  D    +     FD + LPGG  P    L E  V  +I KK    G   A++C  P + + + G+LKG K T   +  + +  A A  +++ V  DG  V+SR PG
Sbjct:    2 KVLILSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAV--AITKKMFEDGKPVASICHGPQILISA-GVLKGRKGTSTVTIRDDVKNAGAEWIDAEVVVDGNWVSSRHPG 152          
BLAST of CN189553 vs. ExPASy Swiss-Prot
Match: PFPI_PYRFU (Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 48/155 (30.97%), Postives = 71/155 (45.81%), Query Frame = 2
Query:  104 KVLVPVANGSEPIEAVITIDVLRRSGADVTVASVEKQLRVDACHGVKIVADALVSDCRDAVFDLIALPGGM-PGATNLKESDVLESIVKKQASAGCLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACASTVESRVQQDGKVVTSRGPG 565
            K+L   AN  E +E +     L+  G +V +AS EK + +   HG  +  D    +     FD + LPGG  P    L E  V   I +K  + G   A +C  P + + + G+LKG K T Y    + +  A    ++  V  DG  V+SR PG
Sbjct:    2 KILFLSANEFEDVELIYPYHRLKEEGHEVYIASFEKGV-ITGKHGYSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAV--EIARKMFTEGKPVATICHGPQILISA-GVLKGRKGTSYIGIRDDMINAGVEWIDREVVVDGNWVSSRHPG 152          
The following BLAST results are available for this feature:
BLAST of CN189553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PFPI_PYRHO3.286e-1232.47Intracellular protease 1 OS=Pyrococcus horikoshii ... [more]
PFPI_PYRAB9.562e-1230.97Intracellular protease 1 OS=Pyrococcus abyssi GN=p... [more]
PFPI_PYRKO1.631e-1130.97Intracellular protease 1 OS=Pyrococcus kodakaraens... [more]
PFPI_PYRFU2.130e-1130.97Intracellular protease 1 OS=Pyrococcus furiosus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189553 ID=CN189553; Name=CN189553; organism=Citrus sinensis; type=EST; length=687bp
GAGGTTTCCTCTCACTCAACAGTTTCTCCCCAAACAAATTCCTTCTTTGA
AAAATCGCATTTTCTCTTTCACAGCAACAGCTACAATGTCTTCAACTTCC
AAAAAGGTTTTGGTGCCTGTTGCGAACGGGAGTGAGCCGATTGAGGCCGT
GATAACGATCGATGTTTTGAGAAGGTCTGGAGCTGACGTCACGGTTGCGT
CTGTGGAGAAACAGCTTCGTGTCGACGCGTGTCATGGTGTCAAGATTGTC
GCTGATGCTCTTGTGTCTGACTGCCGCGACGCTGTTTTTGATCTTATAGC
TCTTCCCGGTGGCATGCCCGGTGCTACCAATCTGAAGGAATCTGATGTAT
TAGAAAGCATTGTGAAGAAGCAGGCCTCAGCTGGGTGTCTTTATGCTGCT
GTCTGTGCTTCACCTGCTGTGGCATTAGGGTCTTGGGGTCTGTTGAAGGG
ATTGAAGGCTACTTGTTATCCGTCATTTATGGAGCAATTAGCTCCTGCTT
GTGCATCAACTGTTGAATCAAGAGTACAGCAGGATGGTAAAGTTGTTACG
AGTCGTGGACCTGGCACTACTATGGAGTTTGCTGTTGCACTTGTTGAGCA
GTTGTATGGGAAAGAGAGAGCTGATGAAGTTTCTGGGCCACTGGTAATGC
GTGCAAATCATGGAGATGAATACACTTATTGCTGAAT
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