CN189552

Overview
NameCN189552
Unique NameCN189552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189552 vs. ExPASy Swiss-Prot
Match: Y967_METJA (Uncharacterized protein MJ0967 OS=Methanocaldococcus jannaschii GN=MJ0967 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 50/164 (30.49%), Postives = 83/164 (50.61%), Query Frame = -1 
Query:  220 EEMEAVMIIDILRRAKANVVVASVEDKLEILASRQIKLVADVLIDEAAKLSYDLIVLPGGLGGAQAFAKSDKLVNMLKKQKESNRPYGAICASPALVLEPHGLLKGKKATAFPA--MCNKLSDQSEI--ENRVVVDGNLITSRGPGTSMEFALAIVEKFLGRNK 699
            EE+   M +      K +VV  +  + + +L +   K+  +  I +     Y  IV+ GG+G  +    + KL+ ++K+    N+   AIC SP +VL   G+LKGKKAT +PA     +L     I  +  VVVDGN+IT++ P  +  F L +++     N+
Sbjct:   46 EELFEPMAVFESNGLKVDVVSTTKGECVGMLGN---KITVEKTIYDVNPDDYVAIVIVGGIGSKEYLWNNTKLIELVKEFYNKNKVVSAICLSP-VVLARAGILKGKKATVYPAPEAIEELKKAGAIYEDRGVVVDGNVITAKSPDYARLFGLEVLKAIEKNNE 205
The following BLAST results are available for this feature:
BLAST of CN189552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
Y967_METJA8.517e-1130.49Uncharacterized protein MJ0967 OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A18_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189552 ID=CN189552; Name=CN189552; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTTGACTCCATGAACTCATTTATTTATAAACCACACTGC
TGTACAAACCCACACAGTGAATCCATATTCAAACATGAATTCAAGTTTCC
ATTTCCCCTCTCTACAAGCAGTAGCAATACAGAAATAAACACACTAGTTT
AATAGTAGACAGGTCCCCATACAAACGTTAGGCGCGAGTGAAAAGCATTA
TCTTTGCAAGCTCAAGTGCCTTGTTGCGGCCCAAAAACTTCTCCACAATT
GCCAGTGCAAACTCCATAGAAGTTCCTGGCCCTCTACTGGTGATGAGGTT
GCCATCAACCACAACCCTGTTTTCGATTTCACTCTGATCTGACAGCTTGT
TGCACATAGCAGGAAAAGCTGTAGCTTTTTTACCCTTGAGTAAGCCATGG
GGCTCCAACACTAAAGCTGGGGATGCACATATAGCACCATAAGGTCTATT
TGATTCCTTTTGCTTCTTTAGCATATTCACCAATTTATCTGACTTCGCAA
ATGCTTGAGCGCCACCAAGTCCACCTGGCAAGACAATTAAATCATACGAC
AGTTTAGCTGCCTCATCAATGAGCACATCTGCCACTAATTTAATTTGACG
AGAAGCCAGAATTTCTAGTTTATCCTCAACTGATGCAACTACAACATTTG
CTTTAGCTCGTCGCAGAATATCAATTATCATAACAGCTTCCATCTCCTCC
GA
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