DR908750

Overview
NameDR908750
Unique NameDR908750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_XENLA (Nuclear transport factor 2 OS=Xenopus laevis GN=ntf2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.690e-13
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 2 
Query:   71 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRL---NYG 430
            E +G +F+  YY  FD DR  L+ +Y   S LT+EGQ++ G   I  K + LPF + +H I++ D QP P +  ++  V G L+ A +D  + F Q+F L+   + ++   ND+FRL   N+G
Sbjct:    8 EQIGASFIQQYYQTFDADRTQLAVIYTDASCLTWEGQQYHGKAAIVEKLSLLPFQKIQHSITSQDHQPTPDS-CIISMVVGQLK-ADDDPIMGFHQVF-LLKNIQDAWVCTNDMFRLALHNFG 127
The following BLAST results are available for this feature:
BLAST of DR908750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NTF2_XENLA3.690e-1336.59Nuclear transport factor 2 OS=Xenopus laevis GN=nt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16878 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908750 ID=DR908750; Name=DR908750; organism=Citrus sinensis; type=EST; length=585bp
ATTTGAGGGGCTGGTGGAGACTACCGACGAAGGGGAGTTGGAAAGAAAAG
AGAGAATGGAAGATCAGACTGAATTGGTGGGAAAGACATTTGTGGGTCAT
TACTACCACCTCTTTGACAACGATAGAGCTTCCCTTTCTTCTCTCTATCA
ACCAACTTCCATGCTCACATTTGAAGGCCAAAAATTTTTTGGAGTTGATG
ATATCTCTACCAAGTTTAACCAGCTACCGTTCGATCAATGCCGACACATG
ATCAGCACCATTGATTCCCAGCCCTGTCCATCCACCGGCGGCTTACTTAT
CTTTGTCAGCGGCAGCCTTCAGTTGGCCGGAGAGGACCACCACTTGAGAT
TCAGCCAGATGTTCCACCTGATTCCAACGCCGCGGGGAAGCTTCGCTGTT
CAGAATGACATATTTCGCCTTAATTATGGTTGAATATTTATTTACTTCTC
CTTAATTCAGATTGTCAACAGTCCTGGTGCTGCGTGATGTGTTCCATCAA
CACATACTGTTATTGTAATCCCCCGGGCCGGGCCGGGCCATATTATGAAC
CAATTAATTTGCTCATTTTATTTTCAAAAAAAAAA
back to top