CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_ASPTN (ATP-dependent RNA helicase dbp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 72/195 (36.92%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  150 GSQFDARQY--DTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED--QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            GS+    +Y  + K+++L +      F+       +F+ +GL   +L+G+ A  F KPS IQ+R +         +++ Q+QSGTGKTA F   IL +LD    Q Q    AL+LAPTRELA+QI  V++ +G +L       + GT+V  D   R  +    VVVGTPG V DM++++ + P  +++ VLDEAD
Sbjct:   49 GSELHEPEYNVEVKLSDLQADPNNPLFS-----VKNFEDLGLDPRILQGLSAMNFRKPSKIQERALPLLLSNPPKNLVGQSQSGTGKTAAFVLNILSRLDLSTEQMQKTPQALILAPTRELARQIVGVIQVMGQFLD----NLIIGTAVPADTNNRPARMEASVVVGTPGTVMDMIKKRIMVPAKLQVLVLDEAD 234          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_ASPNC (ATP-dependent RNA helicase dbp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 77/204 (37.75%), Postives = 112/204 (54.90%), Query Frame = 3
Query:  126 DMAGLAPEGSQFDARQY--DTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH--VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            D A     GS      Y  + K+++L +      F+       +F+ +GL   +L+G+ A  F KPS IQ+R + P   G    +++ Q+QSGTGKTA F   IL +LD    Q Q    AL+LAPTRELA+QI  V++ +G +L       V GT+V  D     A +   VVVGTPG V DM++R+ +  + +++ VLDEAD
Sbjct:   37 DGAAAQQGGSDLHEPDYTVEVKLSDLQADPNNPLFS-----VKNFEDLGLDPRILQGLSAMNFRKPSKIQERAL-PLLLGNPAKNLVGQSQSGTGKTAAFVLNILSRLDLSSEQLQKTPQALILAPTRELARQIVGVIQVMGQFLD----GLVIGTAVPADTGARPAKMECSVVVGTPGTVMDMIKRRIMIANKLRVLVLDEAD 230          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_LODEL (ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus GN=DBP5 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 64/154 (41.56%), Postives = 93/154 (60.39%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SF+ +GL+  LL+G+YA  F KPS IQ+R +         ++I Q+QSGTGKTA F   +L ++D  +   Q + LAPTRELA+Q  +V+  +G Y  +  +  V   SV   Q I      V+VGTPG V D++ R+++    +K+FVLDEAD
Sbjct:  117 SFEELGLKPELLKGLYAMKFNKPSKIQERALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESIKAPQCICLAPTRELARQTLEVVETMGKYSNI-TYQLVVPDSVPRGQAI---SAQVLVGTPGIVHDLINRKAINVAKVKVFVLDEAD 266          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_CANGA (ATP-dependent rRNA helicase RRP3 OS=Candida glabrata GN=RRP3 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 62/155 (40.00%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  243 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            ++SF  + L   L++      F KP+ IQ R I P   G DVI  AQ+G+GKTA F   IL +L        A VLAPTRELAQQI++   +LG  +GV+    VGG ++ +  R L    H+++ TPGR+ D L   +      +K  V+DEAD
Sbjct:   72 FESFAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKLWEDQQPYYACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLKNLKFLVMDEAD 226          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y1688_STAEQ (Probable DEAD-box ATP-dependent RNA helicase SERP1688 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1688 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 58/153 (37.91%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +G+ +  ++ + A GF++P+ IQ+  I    +G D++ QAQ+GTGKT  F   +++++  G    Q+L+LAPTRELA Q+ + +R       V+V    GG  +    + L+ G  +VVGTPGRV D L R++L+   I   +LDEADE
Sbjct:    3 NFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKV-VGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADE 154          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_KLULA (ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 62/154 (40.26%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SF+ +GL E LL+G+YA  F+KPS IQ++ +    +    ++I Q+QSGTGKTA F   +L ++D  +   QA+ L+P RELA+Q  +V++ +G +        V  +     +R      ++VVGTPG V D++RR+ L    IK+FVLDEAD
Sbjct:   80 SFEELGLSEELLKGLYAMKFQKPSKIQEKALPLLIRDPPHNMIAQSQSGTGKTAAFSLTMLTRVDPNVNSTQAICLSPARELARQTLEVIQEMGKFTKTSSQLVVPDSF----ERNKPITANIVVGTPGTVLDLIRRKMLNLGSIKVFVLDEAD 229          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_GIBZE (ATP-dependent RNA helicase DBP5 OS=Gibberella zeae GN=DBP5 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 70/201 (34.83%), Postives = 114/201 (56.72%), Query Frame = 3
Query:  114 QSFADMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLV-QCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            Q+  ++  L   G Q      +  ++EL + +   F ++      ++  +GL+E+LL+G+ +  F KPS +Q + +         +++ Q+QSGTGKTA F + IL ++D+    Q QAL LAP+RELA+QIE V+ A+G ++   KV A + G   R +         V+VGTPG V D++RR+ L    +++ VLDEAD
Sbjct:   36 QADGNIEDLGGSGLQEPEWDVEVSLSELQNNEATPFHSA-----TTWQDLGLREDLLKGLLSLNFLKPSKVQGKSLPLMLSDPPRNMLAQSQSGTGKTAAFVTAILSRVDFSKPDQPQALALAPSRELARQIEGVINAIGRFVENKKVAAAIPGVLPRGEP----VRASVIVGTPGTVMDIIRRRQLDISQLRVLVLDEAD 227          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_ASPCL (ATP-dependent RNA helicase dbp5 OS=Aspergillus clavatus GN=dbp5 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 74/205 (36.10%), Postives = 112/205 (54.63%), Query Frame = 3
Query:  123 ADMAGLAPEGSQFDARQY--DTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED--QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            AD A     GS     +Y  + K+++L +      ++       +F+ +GL   +L+G+ A  F KPS IQ+R + P   G    +++ Q+QSGTGKTA F    L ++D    Q Q    AL+LAPTRELA+QI  V+  +G +L       + GT+V  D   R  +    + VGTPG V DM++R+ + P+ +K+ VLDEAD
Sbjct:   39 ADGASAPLGGSDLREPEYNVEVKLSDLQADPNNPLYS-----VKNFEDLGLDPRILKGLSAMNFRKPSKIQERAL-PLLLGNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQIVGVVSVMGQFLD----GLIIGTAVPADINNRPKRLECSIAVGTPGTVMDMIKRRIMVPNKLKVLVLDEAD 233          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_YEAST (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae GN=DBP5 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 63/154 (40.91%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SFD +GL   LL+GIYA  F+KPS IQ+R +         ++I Q+QSGTGKTA F   +L +++      QA+ LAP+RELA+Q  +V++ +G +  +     V  +     ++  Q    V+VGTPG V D++RR+ ++   IK+FVLDEAD
Sbjct:   93 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSF----EKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 242          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_YEAS7 (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 63/154 (40.91%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SFD +GL   LL+GIYA  F+KPS IQ+R +         ++I Q+QSGTGKTA F   +L +++      QA+ LAP+RELA+Q  +V++ +G +  +     V  +     ++  Q    V+VGTPG V D++RR+ ++   IK+FVLDEAD
Sbjct:   93 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSF----EKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 242          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP5_ASPTN5.733e-2336.92ATP-dependent RNA helicase dbp5 OS=Aspergillus ter... [more]
DBP5_ASPNC5.733e-2337.75ATP-dependent RNA helicase dbp5 OS=Aspergillus nig... [more]
DBP5_LODEL7.488e-2341.56ATP-dependent RNA helicase DBP5 OS=Lodderomyces el... [more]
RRP3_CANGA9.780e-2340.00ATP-dependent rRNA helicase RRP3 OS=Candida glabra... [more]
Y1688_STAEQ1.277e-2237.91Probable DEAD-box ATP-dependent RNA helicase SERP1... [more]
DBP5_KLULA1.277e-2240.26ATP-dependent RNA helicase DBP5 OS=Kluyveromyces l... [more]
DBP5_GIBZE1.277e-2234.83ATP-dependent RNA helicase DBP5 OS=Gibberella zeae... [more]
DBP5_ASPCL1.277e-2236.10ATP-dependent RNA helicase dbp5 OS=Aspergillus cla... [more]
DBP5_YEAST1.668e-2240.91ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_YEAS71.668e-2240.91ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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