CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_SCHPO (ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe GN=dbp5 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22 Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 SF+ + L+ LL+GIY+ F+KPS IQ++ + ++I Q+QSGTGKTA F +L ++D + + QA+ LAP+RELA+QI V+ +G Y VK + SV + +I +V+GTPG V D+++R+ L IK+FVLDEAD Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI-KDSVPKGAKI---DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEAD 264
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_MAGGR (ATP-dependent RNA helicase DBP5 OS=Magnaporthe grisea GN=DBP5 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22 Identity = 64/156 (41.03%), Postives = 94/156 (60.26%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLV-QCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 SF +GL + ++ G+ A F+KPS IQ R + ++I Q+QSGTGKT F IL ++D+ Q QAL LAP+RELA+QI+ V++++G + G+ V A + G RE +VVVGTPG V D++RR+ +K+ V+DEAD Sbjct: 97 SFSELGLPQGIIDGLLAMNFKKPSKIQARALPLMLSNPPRNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSIGQFCTGLVVDAAIPGAISRETG----VKANVVVGTPGTVMDLIRRRQFDVSQLKLLVVDEAD 248
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3) HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22 Identity = 64/160 (40.00%), Postives = 86/160 (53.75%), Query Frame = 3 Query: 234 DEV-YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADE 707 DEV + +F + L LL I F KP+ IQ I +G D+I AQ+G+GKTA F ILQ L LVLAP RELA QI++ ALG +GV+ VGG + + R L H+++ TPGR+ D L + +K FV+DEAD+ Sbjct: 66 DEVKFSTFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADK 225
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_EMENI (ATP-dependent RNA helicase dbp5 OS=Emericella nidulans GN=dbp5 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22 Identity = 69/162 (42.59%), Postives = 99/162 (61.11%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQ--RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 +F+ +GL +L+G+ A F KPS IQ+R + P G +++ Q+QSGTGKTA F IL +LD Q Q AL+LAPTRELA+QI V++ +G +L G+ + GT+V D R + VVVGTPG V DM++++ + +K+ VLDEAD Sbjct: 70 NFEDLGLDPRILQGLSAMNFRKPSKIQERAL-PLLMGNPPKNLVGQSQSGTGKTAAFVLNILSRLDLSSEQAQKTPQALILAPTRELARQIVGVIQVMGKFLDGLHI-----GTAVPADTNARPTRMEASVVVGTPGTVMDMIKKRIMVAAKLKVIVLDEAD 225
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22 Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +F +GL +++ + G+ KPS IQ I +G DV+ AQ+G+GKTA F +L L+ L Q LVLAPTRELA Q+ + Y +G+ V GG R L+ G +VVGTPGR+ D L+R +L + VLDEADE Sbjct: 7 TFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADE 160
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_CRYNE (ATP-dependent RNA helicase DBP5 OS=Cryptococcus neoformans GN=DBP5 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22 Identity = 68/191 (35.60%), Postives = 107/191 (56.02%), Query Frame = 3 Query: 147 EGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADE 707 EG + Q + K+ +L ++ SF + L E+L++GI A GF+KPS IQ++ + ++I Q+QSGTGKTA F +L ++D + QA+ +AP+RELA+QI++V+ +G + V + G+ R + Q +++GTPG + DML R S L P I++ VLDEADE Sbjct: 120 EGLITNTFQVEVKLADLQGDPNSPLYS-----VQSFKELNLHEDLMKGIIAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQFTQVGTFLAIPGSWSRNSRIDKQ----ILIGTPGTLVDMLMRGSRILDPRMIRVLVLDEADE 301
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22 Identity = 69/185 (37.30%), Postives = 98/185 (52.97%), Query Frame = 3 Query: 162 DARQYDTKMNELLSTDGQDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVRED-QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 + + K E+ D + +Y ++ S F L+ +LR I GFE PS +Q I G+DV+ QA+SG GKTA F LQQL+ + + + TRELA QI K YL GVKV GG ++++D +R+ H+VVGTPGR+ + R L+ D +K FVLDE D+ Sbjct: 12 EQEEIQDKQPEVGGGDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDK 196
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22 Identity = 62/161 (38.51%), Postives = 90/161 (55.90%), Query Frame = 3 Query: 234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML----RRQSLRPDYIKMFVLDEAD 704 +E + SF + L L+ F KP+ IQ + I P +G D+I AQ+G+GKTA F IL +L + A +LAPTRELAQQI++ +LG +GV+ VGG ++ + R L H+++ TPGR+ D L R +LR + V+DEAD Sbjct: 62 EEGFSSFRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLEVHKRGFALRKQ--QFLVMDEAD 220
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22 Identity = 65/154 (42.21%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG-VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +F + + +LR I G+E P+AIQ I G DV+ AQ+GTGKTA F +L ++D QALVL PTRELA Q+ + G YL + V GG+S L+ G VVVGTPGR+ D L R +L + VLDEADE Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADE 167
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22 Identity = 62/157 (39.49%), Postives = 86/157 (54.78%), Query Frame = 3 Query: 240 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 + +F +GL +++ + G+ KPS IQ I +G DV+ AQ+G+GKTA F +L L+ L Q LVLAPTRELA Q+ + Y +G+ V GG R L+ G +VVGTPGR+ D L+R +L + VLDEADE Sbjct: 4 IESTFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADE 160 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |