CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_SCHPO (ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe GN=dbp5 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SF+ + L+  LL+GIY+  F+KPS IQ++ +         ++I Q+QSGTGKTA F   +L ++D  + + QA+ LAP+RELA+QI  V+  +G Y  VK    +   SV +  +I      +V+GTPG V D+++R+ L    IK+FVLDEAD
Sbjct:  115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI-KDSVPKGAKI---DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEAD 264          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_MAGGR (ATP-dependent RNA helicase DBP5 OS=Magnaporthe grisea GN=DBP5 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 64/156 (41.03%), Postives = 94/156 (60.26%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLV-QCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SF  +GL + ++ G+ A  F+KPS IQ R +         ++I Q+QSGTGKT  F   IL ++D+    Q QAL LAP+RELA+QI+ V++++G +  G+ V A + G   RE         +VVVGTPG V D++RR+      +K+ V+DEAD
Sbjct:   97 SFSELGLPQGIIDGLLAMNFKKPSKIQARALPLMLSNPPRNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSIGQFCTGLVVDAAIPGAISRETG----VKANVVVGTPGTVMDLIRRRQFDVSQLKLLVVDEAD 248          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 64/160 (40.00%), Postives = 86/160 (53.75%), Query Frame = 3
Query:  234 DEV-YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADE 707
            DEV + +F  + L   LL  I    F KP+ IQ   I    +G D+I  AQ+G+GKTA F   ILQ L         LVLAP RELA QI++   ALG  +GV+    VGG  + +  R L    H+++ TPGR+ D L   +      +K FV+DEAD+
Sbjct:   66 DEVKFSTFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADK 225          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_EMENI (ATP-dependent RNA helicase dbp5 OS=Emericella nidulans GN=dbp5 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 69/162 (42.59%), Postives = 99/162 (61.11%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQ--RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            +F+ +GL   +L+G+ A  F KPS IQ+R + P   G    +++ Q+QSGTGKTA F   IL +LD    Q Q    AL+LAPTRELA+QI  V++ +G +L G+ +     GT+V  D   R  +    VVVGTPG V DM++++ +    +K+ VLDEAD
Sbjct:   70 NFEDLGLDPRILQGLSAMNFRKPSKIQERAL-PLLMGNPPKNLVGQSQSGTGKTAAFVLNILSRLDLSSEQAQKTPQALILAPTRELARQIVGVIQVMGKFLDGLHI-----GTAVPADTNARPTRMEASVVVGTPGTVMDMIKKRIMVAAKLKVIVLDEAD 225          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +GL   +++ +   G+ KPS IQ   I    +G DV+  AQ+G+GKTA F   +L  L+  L   Q LVLAPTRELA Q+ +       Y +G+ V    GG       R L+ G  +VVGTPGR+ D L+R +L    +   VLDEADE
Sbjct:    7 TFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADE 160          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_CRYNE (ATP-dependent RNA helicase DBP5 OS=Cryptococcus neoformans GN=DBP5 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 68/191 (35.60%), Postives = 107/191 (56.02%), Query Frame = 3
Query:  147 EGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADE 707
            EG   +  Q + K+ +L        ++       SF  + L E+L++GI A GF+KPS IQ++ +         ++I Q+QSGTGKTA F   +L ++D  +   QA+ +AP+RELA+QI++V+  +G +  V     + G+  R  +   Q    +++GTPG + DML R S  L P  I++ VLDEADE
Sbjct:  120 EGLITNTFQVEVKLADLQGDPNSPLYS-----VQSFKELNLHEDLMKGIIAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQFTQVGTFLAIPGSWSRNSRIDKQ----ILIGTPGTLVDMLMRGSRILDPRMIRVLVLDEADE 301          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 69/185 (37.30%), Postives = 98/185 (52.97%), Query Frame = 3
Query:  162 DARQYDTKMNELLSTDGQDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVRED-QRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +  +   K  E+   D +    +Y  ++ S F    L+  +LR I   GFE PS +Q   I     G+DV+ QA+SG GKTA F    LQQL+    +   + +  TRELA QI K       YL GVKV    GG ++++D +R+     H+VVGTPGR+  + R   L+ D +K FVLDE D+
Sbjct:   12 EQEEIQDKQPEVGGGDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDK 196          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 62/161 (38.51%), Postives = 90/161 (55.90%), Query Frame = 3
Query:  234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML----RRQSLRPDYIKMFVLDEAD 704
            +E + SF  + L   L+       F KP+ IQ + I P  +G D+I  AQ+G+GKTA F   IL +L +      A +LAPTRELAQQI++   +LG  +GV+    VGG ++ +  R L    H+++ TPGR+ D L    R  +LR    +  V+DEAD
Sbjct:   62 EEGFSSFRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLEVHKRGFALRKQ--QFLVMDEAD 220          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 65/154 (42.21%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLG-VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  + +   +LR I   G+E P+AIQ   I     G DV+  AQ+GTGKTA F   +L ++D      QALVL PTRELA Q+ +     G YL  + V    GG+S       L+ G  VVVGTPGR+ D L R +L    +   VLDEADE
Sbjct:   14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADE 167          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 62/157 (39.49%), Postives = 86/157 (54.78%), Query Frame = 3
Query:  240 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +  +F  +GL   +++ +   G+ KPS IQ   I    +G DV+  AQ+G+GKTA F   +L  L+  L   Q LVLAPTRELA Q+ +       Y +G+ V    GG       R L+ G  +VVGTPGR+ D L+R +L    +   VLDEADE
Sbjct:    4 IESTFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADE 160          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP5_SCHPO1.668e-2241.56ATP-dependent RNA helicase dbp5 OS=Schizosaccharom... [more]
DBP5_MAGGR2.179e-2241.03ATP-dependent RNA helicase DBP5 OS=Magnaporthe gri... [more]
RRP3_PICST2.845e-2240.00ATP-dependent rRNA helicase RRP3 OS=Pichia stipiti... [more]
DBP5_EMENI2.845e-2242.59ATP-dependent RNA helicase dbp5 OS=Emericella nidu... [more]
DEAD_BUCAP3.716e-2240.26Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DBP5_CRYNE3.716e-2235.60ATP-dependent RNA helicase DBP5 OS=Cryptococcus ne... [more]
UAP56_CAEEL6.339e-2237.30Spliceosome RNA helicase BAT1 homolog OS=Caenorhab... [more]
RRP3_ASHGO6.339e-2238.51ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypi... [more]
DEAD_MYCTU6.339e-2242.21Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
DEAD_BUCAI6.339e-2239.49Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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