CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_ASPFU (ATP-dependent RNA helicase dbp5 OS=Aspergillus fumigatus GN=dbp5 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 63/159 (39.62%), Postives = 96/159 (60.38%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            +F+ +GL   +L+G+ +  F KPS IQ+R +         +++ Q+QSGTGKTA F    L ++D    Q Q    AL+LAPTRELA+QI  V++ +G ++ G+ + A V       D R  +    +VVGTPG V DM++R++  P+ +K+ VLDEAD
Sbjct:   78 NFEDLGLDPRILKGLSSMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDGLIIGAAV---PTDRDSRPKRLECSIVVGTPGTVGDMIKRRTFIPNKLKVLVLDEAD 233          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_ASHGO (ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 61/154 (39.61%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGI--VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SF+ +GL   LL+G+YA  F+KPS IQ+R +  + +    ++I Q+QSGTGKTA F   +L ++D  +   QA+ LAP+R LA+Q  +V++ +G +  +     V  +   E  + + A  H++VGTPG V D++RR+ ++   +K FVLDEAD
Sbjct:   80 SFEELGLAPELLKGLYAMKFQKPSKIQERALPLLLYNPPRNMIAQSQSGTGKTAAFSLTMLSRVDVAVPATQAICLAPSR-LARQTLEVIQEMGKFTKIASQLIVPDSY--EKNKAINA--HIIVGTPGTVLDLMRRKMIQLGKVKTFVLDEAD 228          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_CHAGB (ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 62/151 (41.06%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I     G D+I QA+SG GKTA F    LQQ++    +C  LV+  TRELA QI         Y+  +K     GGT +++D  +L   +   H++VGTPGR+  ++R + LR   ++MFVLDE D+
Sbjct:   57 LKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVGTPGRLNALVRDKHLRLGNVRMFVLDECDK 207          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX47_DICDI (Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum GN=ddx47 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 66/189 (34.92%), Postives = 95/189 (50.26%), Query Frame = 3
Query:  147 EGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDS--FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            E S  +  + + ++ E ++   Q      ++ Y++  F+++G+   ++      GF KP  IQ+  I    KG D+I  AQ+G+GKTA F   +LQ+L         L LAPTRELA QI     A+G  +GVK    VGG         L    HVVVG+PGRV   L   +      IK F++DEAD
Sbjct:   84 EDSLLEKEEEEKEIEEFINNTNQKKSEEEEKKYENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEAD 272          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_CHAGB (ATP-dependent RNA helicase DBP5 OS=Chaetomium globosum GN=DBP5 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 62/156 (39.74%), Postives = 96/156 (61.54%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGL-VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SF+ +GL +++  G+ A  F+KPS IQ++ +         ++I Q+QSGTGKTA F   +L ++D     Q QAL+LAP+RELA+QI+ V++ +G +   + V A + G+  RE         +VVVGTPG V D++RR+      +K+ V+DEAD
Sbjct:   73 SFEELGLAKSINDGLLAMNFKKPSKIQEKALPLMLSNPPRNMIAQSQSGTGKTAAFVLTVLSRVDLTKPTQPQALLLAPSRELARQIQSVIQTIGQFCENLNVEAAIPGSISRETG----VRANVVVGTPGTVMDLIRRRQFDVSQLKIMVIDEAD 224          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 70/224 (31.25%), Postives = 110/224 (49.11%), Query Frame = 3
Query:  126 DMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDE--------------------------VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            + AG A E      +  D    E +  DG +F    +E                          V+ +F+++ L   +L+G+ A G+ KPS IQ   I     G DVI  A +G+GKTA F   I+++L Y    +   + LVL PTRELA Q+  V + LG ++ G+     VGG ++R+ ++ L+    +V+ TPGR+ D +R   S   D +++ V+DEAD
Sbjct:  153 EAAGAADESDSESDKDSDNSAEEAVELDGVEFGDEQEEAREEDTAEEMAQFYAPSNEGEEAKNVVHSTFNSLSLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKLRPDIVIATPGRIIDHIRNSASFSVDSVEVLVIDEAD 376          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_NEOFI (ATP-dependent RNA helicase dbp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 72/206 (34.95%), Postives = 112/206 (54.37%), Query Frame = 3
Query:  123 ADMAGLAPE---GSQFDARQY--DTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            AD    AP    GS     +Y  + K+++L +      ++       +F+ +GL   +L+G+    F KPS IQ+R +         +++ Q+QSGTGKTA F    L ++D    Q Q    AL+LAPTRELA+QI  V++ +G ++ G+ + A V       D R  +    +VVGTPG V DM++R++  P+ +K+ VLDEAD
Sbjct:   36 ADQTDGAPAQLGGSDLHEPEYNVEVKLSDLQADPNNPLYS-----VKNFEDLGLDPRILKGLSNMNFRKPSKIQERALPLLLNNPPKNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQILGVVQVMGQFVDGLIIGAAV---PTDRDSRPKRLECSIVVGTPGTVGDMIKRRTFIPNKLKVLVLDEAD 233          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_CANAL (ATP-dependent RNA helicase DBP5 OS=Candida albicans GN=DBP5 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 60/154 (38.96%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SF+ +GL   LL+G+YA  F KPS IQ++ +         ++I Q+QSGTGKTA F   +L ++D  +   Q L L+PTRELA+Q  +V+  +G +  +     V     R           V+VGTPG   D++RR+ L    +K+FVLDEAD
Sbjct:  151 SFEELGLSPELLKGLYAMKFNKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPTIKMPQCLCLSPTRELARQTLEVITTMGKFTNITTQLVVPNAIPRGS----SVNAQVLVGTPGIAIDLIRRRQLNLSKMKVFVLDEAD 300          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_MAGGR (ATP-dependent RNA helicase SUB2 OS=Magnaporthe grisea GN=SUB2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 68/180 (37.78%), Postives = 97/180 (53.89%), Query Frame = 3
Query:  183 KMNELLSTDGQDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            K  EL +    D   SY  ++ + F    L+  LLR I   GFE PS +QQ  I     G D+I QA+SG GKTA F    LQQ++    +C  LV+  TRELA QI         Y+  +K     GGT +++D  +L   +   H++VGTPGR+  ++R + LR   +++FVLDE D+
Sbjct:   30 KKGELAAGGNVDKKGSYVGIHSTGFRDFLLKPELLRAIGDCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAELLKNKETHPHIIVGTPGRLNALVRDKFLRLSSVRIFVLDECDK 209          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 62/169 (36.69%), Postives = 92/169 (54.44%), Query Frame = 3
Query:  246 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----SGILQQLDYGL------------VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            D F+A GL E +LR +   G+E P+ +Q+  +     G D++  AQ+G+GKTA FC    SG++     G+             + +ALVLAPTRELA QI +  +      G++V    GGT +    R L+ G  ++V TPGR+ DM+ R  +  + IK  V+DEAD
Sbjct:   84 DGFEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEAD 252          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP5_ASPFU8.279e-2239.62ATP-dependent RNA helicase dbp5 OS=Aspergillus fum... [more]
DBP5_ASHGO8.279e-2239.61ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii... [more]
SUB2_CHAGB1.081e-2141.06ATP-dependent RNA helicase SUB2 OS=Chaetomium glob... [more]
DDX47_DICDI1.081e-2134.92Probable ATP-dependent RNA helicase ddx47 OS=Dicty... [more]
DBP5_CHAGB1.081e-2139.74ATP-dependent RNA helicase DBP5 OS=Chaetomium glob... [more]
DRS1_ASHGO1.412e-2131.25ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii... [more]
DBP5_NEOFI1.412e-2134.95ATP-dependent RNA helicase dbp5 OS=Neosartorya fis... [more]
DBP5_CANAL1.412e-2138.96ATP-dependent RNA helicase DBP5 OS=Candida albican... [more]
SUB2_MAGGR1.844e-2137.78ATP-dependent RNA helicase SUB2 OS=Magnaporthe gri... [more]
RH52A_ORYSJ1.844e-2136.69DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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