CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_CANAL (ATP-dependent rRNA helicase RRP3 OS=Candida albicans GN=RRP3 PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 62/155 (40.00%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  243 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            + +F  + L  +LL  I +  F KP+ IQ   I    +G D+I  AQ+G+GKTA F   ILQ L +      ALVLAPTREL  QI+    ALG  +G++    VGG  + +  R L    HV+V TPGR+ D L   +      +K  V+DEAD
Sbjct:  122 FKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEAD 276          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 56/153 (36.60%), Postives = 89/153 (58.17%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F    L  +L++ I   GFE+ + IQ + I       DVI QAQ+GTGKTA F   ++++++      QA+V+APTRELA Q+ + +  +G     KV    GG  +    R L+   +++VGTPGR+ D + R+++R + +   V+DEADE
Sbjct:    4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADE 156          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y802_STAS1 (Probable DEAD-box ATP-dependent RNA helicase SSP0802 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 55/153 (35.95%), Postives = 90/153 (58.82%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F  +G+ + +   + + GF + + IQ+  I    +G DV+ QAQ+GTGKT  F   +++++       Q+L+LAPTRELA Q+ + ++A      ++V    GG  +    + L+ G  +VVGTPGRV D L R++L+ + I   +LDEADE
Sbjct:    3 NFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIEKVA-DQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADE 154          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_NEUCR (ATP-dependent RNA helicase dbp-5 OS=Neurospora crassa GN=dbp-5 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 65/158 (41.14%), Postives = 96/158 (60.76%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLV-QCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVH--VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SFD +GL E + RG+ A  F+KPS +Q++ +         ++I Q+QSGTGKTA F   +L ++D     Q QAL+LAP+RELA+QI+ V++ +G +   + V A + G   RE       GV   VVVGTPG V D+++R+      +K+ V+DEAD
Sbjct:   75 SFDELGLPEAVNRGLLAINFKKPSKVQEKCLPLMLSDPPRNMIAQSQSGTGKTAAFVLTVLSRIDLSKPHQPQALLLAPSRELARQIQTVVQTIGQFCENLIVEAAIPGAISRE------TGVRGSVVVGTPGTVMDLVKRRQFDISQLKVLVIDEAD 226          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_DEBHA (ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 59/154 (38.31%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            SF+ +GL   LL+G+YA  F KPS IQ++ +         ++I Q+QSGTGKTA F   +L ++D      Q + LAP RELA+Q  +V+  +  +  +     V        QR      HV+VGTPG + D++RR+ +    +K+FVLDEAD
Sbjct:  104 SFEELGLSSELLKGLYAMKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESDPNTQCICLAPARELARQTLEVITTMSKFTKITSQLIVPDAM----QRGQSTCAHVLVGTPGTLLDLIRRKLINTSKVKVFVLDEAD 253          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 57/153 (37.25%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F    L  +L + I   GFE+ + IQ + I       DVI QAQ+GTGKTA F   ++++++      QA+V+APTRELA Q+ + +  +G     +V    GG  +    R L+   H++VGTPGR+ D + R+++R   +   VLDEADE
Sbjct:    4 TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADE 156          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_DEBHA (ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 62/155 (40.00%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  243 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            + SF+ + L   LL  I    F KP+ IQ   I    +G D+I  AQ+G+GKTA F   ILQ L         LVLAPTRELA QI++   ALG  +G++    VGG  + +  R L    H++V TPGR+ D L   +      +K  V+DEAD
Sbjct:   64 FKSFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEAD 218          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 71/191 (37.17%), Postives = 100/191 (52.36%), Query Frame = 3
Query:  150 GSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            GS  DA+   T + E    +  +   SY  ++ + F    L+  LLR I   GFE PS +QQ  I     G DV+ QA++G GKTA F    LQQL+    +C  +VL  TRELA QI         YL  VK     GG+ +++D  ++Q      HV+V TPGR+  ++R + LR   +K FV+DE D+
Sbjct:   28 GSNGDAKAETTTVKE----ENTEQKGSYVGIHSTGFRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHVIVATPGRLHALVRDKHLRLGNVKTFVIDECDK 214          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 62/153 (40.52%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            +F  +G+   L R   + GF+KPS IQ   I    +G D+I  AQ+G+GKTA F   ILQ L        ALVLAPTRELA QI + + +LG  +GV+    VGG  +      L    H++V TPGR+ D L   +      +K  V+DEAD
Sbjct:   39 TFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEAD 191          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_MAGGR (ATP-dependent RNA helicase DRS1 OS=Magnaporthe grisea GN=DRS1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 67/190 (35.26%), Postives = 98/190 (51.58%), Query Frame = 3
Query:  147 EGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            E  Q +  +   KM E  + D     T+      SF +M L   +LRG+ + GF KP+ IQ + I     G DV+  A +G+GKTA F   IL++L Y    +   + ++LAPTRELA Q   V   L  +  +K    VGG S++  +  L+    V++ TPGR  D +R   S   D +++ VLDEAD
Sbjct:  224 ESEQDEDEEEAAKMKEFFAADEPKSDTNKGNA--SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEAD 411          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_CANAL2.409e-2140.00ATP-dependent rRNA helicase RRP3 OS=Candida albica... [more]
CSHA_BACSU2.409e-2136.60DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
Y802_STAS13.146e-2135.95Probable DEAD-box ATP-dependent RNA helicase SSP08... [more]
DBP5_NEUCR3.146e-2141.14ATP-dependent RNA helicase dbp-5 OS=Neurospora cra... [more]
DBP5_DEBHA3.146e-2138.31ATP-dependent RNA helicase DBP5 OS=Debaryomyces ha... [more]
CSHA_BACLD3.146e-2137.25DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
RRP3_DEBHA4.109e-2140.00ATP-dependent rRNA helicase RRP3 OS=Debaryomyces h... [more]
SUB2_YARLI5.366e-2137.17ATP-dependent RNA helicase SUB2 OS=Yarrowia lipoly... [more]
RRP3_CRYNE5.366e-2140.52ATP-dependent rRNA helicase RRP3 OS=Cryptococcus n... [more]
DRS1_MAGGR5.366e-2135.26ATP-dependent RNA helicase DRS1 OS=Magnaporthe gri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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