CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_CANAL (ATP-dependent rRNA helicase RRP3 OS=Candida albicans GN=RRP3 PE=3 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 62/155 (40.00%), Postives = 84/155 (54.19%), Query Frame = 3 Query: 243 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 + +F + L +LL I + F KP+ IQ I +G D+I AQ+G+GKTA F ILQ L + ALVLAPTREL QI+ ALG +G++ VGG + + R L HV+V TPGR+ D L + +K V+DEAD Sbjct: 122 FKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEAD 276
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 56/153 (36.60%), Postives = 89/153 (58.17%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +F L +L++ I GFE+ + IQ + I DVI QAQ+GTGKTA F ++++++ QA+V+APTRELA Q+ + + +G KV GG + R L+ +++VGTPGR+ D + R+++R + + V+DEADE Sbjct: 4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADE 156
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: Y802_STAS1 (Probable DEAD-box ATP-dependent RNA helicase SSP0802 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 55/153 (35.95%), Postives = 90/153 (58.82%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +F +G+ + + + + GF + + IQ+ I +G DV+ QAQ+GTGKT F +++++ Q+L+LAPTRELA Q+ + ++A ++V GG + + L+ G +VVGTPGRV D L R++L+ + I +LDEADE Sbjct: 3 NFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIEKVA-DQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADE 154
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_NEUCR (ATP-dependent RNA helicase dbp-5 OS=Neurospora crassa GN=dbp-5 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 65/158 (41.14%), Postives = 96/158 (60.76%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLV-QCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVH--VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 SFD +GL E + RG+ A F+KPS +Q++ + ++I Q+QSGTGKTA F +L ++D Q QAL+LAP+RELA+QI+ V++ +G + + V A + G RE GV VVVGTPG V D+++R+ +K+ V+DEAD Sbjct: 75 SFDELGLPEAVNRGLLAINFKKPSKVQEKCLPLMLSDPPRNMIAQSQSGTGKTAAFVLTVLSRIDLSKPHQPQALLLAPSRELARQIQTVVQTIGQFCENLIVEAAIPGAISRE------TGVRGSVVVGTPGTVMDLVKRRQFDISQLKVLVIDEAD 226
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_DEBHA (ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii GN=DBP5 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 59/154 (38.31%), Postives = 87/154 (56.49%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 SF+ +GL LL+G+YA F KPS IQ++ + ++I Q+QSGTGKTA F +L ++D Q + LAP RELA+Q +V+ + + + V QR HV+VGTPG + D++RR+ + +K+FVLDEAD Sbjct: 104 SFEELGLSSELLKGLYAMKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDESDPNTQCICLAPARELARQTLEVITTMSKFTKITSQLIVPDAM----QRGQSTCAHVLVGTPGTLLDLIRRKLINTSKVKVFVLDEAD 253
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 57/153 (37.25%), Postives = 87/153 (56.86%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +F L +L + I GFE+ + IQ + I DVI QAQ+GTGKTA F ++++++ QA+V+APTRELA Q+ + + +G +V GG + R L+ H++VGTPGR+ D + R+++R + VLDEADE Sbjct: 4 TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADE 156
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_DEBHA (ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii GN=RRP3 PE=3 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21 Identity = 62/155 (40.00%), Postives = 83/155 (53.55%), Query Frame = 3 Query: 243 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 + SF+ + L LL I F KP+ IQ I +G D+I AQ+G+GKTA F ILQ L LVLAPTRELA QI++ ALG +G++ VGG + + R L H++V TPGR+ D L + +K V+DEAD Sbjct: 64 FKSFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEAD 218
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 71/191 (37.17%), Postives = 100/191 (52.36%), Query Frame = 3 Query: 150 GSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 GS DA+ T + E + + SY ++ + F L+ LLR I GFE PS +QQ I G DV+ QA++G GKTA F LQQL+ +C +VL TRELA QI YL VK GG+ +++D ++Q HV+V TPGR+ ++R + LR +K FV+DE D+ Sbjct: 28 GSNGDAKAETTTVKE----ENTEQKGSYVGIHSTGFRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHVIVATPGRLHALVRDKHLRLGNVKTFVIDECDK 214
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 62/153 (40.52%), Postives = 83/153 (54.25%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 +F +G+ L R + GF+KPS IQ I +G D+I AQ+G+GKTA F ILQ L ALVLAPTRELA QI + + +LG +GV+ VGG + L H++V TPGR+ D L + +K V+DEAD Sbjct: 39 TFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEAD 191
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_MAGGR (ATP-dependent RNA helicase DRS1 OS=Magnaporthe grisea GN=DRS1 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 67/190 (35.26%), Postives = 98/190 (51.58%), Query Frame = 3 Query: 147 EGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 E Q + + KM E + D T+ SF +M L +LRG+ + GF KP+ IQ + I G DV+ A +G+GKTA F IL++L Y + + ++LAPTRELA Q V L + +K VGG S++ + L+ V++ TPGR D +R S D +++ VLDEAD Sbjct: 224 ESEQDEDEEEAAKMKEFFAADEPKSDTNKGNA--SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEAD 411 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |