CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 64/149 (42.95%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ+D    Q  ALVL  TRELA QI         YL  VKV    GG  +++ + +L+    H+VVGTPGR+  + R + L    ++ F+LDE D+
Sbjct:   58 LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDK 206          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 64/149 (42.95%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ+D    Q  ALVL  TRELA QI         YL  VKV    GG  +++ + +L+    H+VVGTPGR+  + R + L    ++ F+LDE D+
Sbjct:   58 LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDK 206          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_YARLI (ATP-dependent RNA helicase DBP5 OS=Yarrowia lipolytica GN=DBP5 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 58/153 (37.91%), Postives = 91/153 (59.48%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F+ +GL ENLL+G+YA  F KPS IQ++ +         ++I Q+QSGTGKT  F   +L ++D  L   Q + LAP+RELA+Q   V+  +  +  +  H  V  ++ R  +   Q    ++VGTPG V  +L+++ +   ++K+FVLDEAD
Sbjct:  101 FEDLGLDENLLKGLYAMKFNKPSKIQEKALPLLLSDPPHNMIGQSQSGTGKTGAFSLTMLSRVDPNLKAVQCICLAPSRELARQTLDVVDEMKKFTDITTHLIVPESTERGQKVTSQ----ILVGTPGSVAGLLQKKQIDAKHVKVFVLDEAD 249          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I     G DV+ QA+SG GKTA F    LQQ++    +   ++L  TRELA QI+        ++  V+     GGT +  DQ IL   +   H+VVGTPGR   ++R + L    +K FVLDE D+
Sbjct:   66 LKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDK 216          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 64/172 (37.21%), Postives = 90/172 (52.33%), Query Frame = 3
Query:  192 ELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            E  S   QD   + ++ + +F  + L   L+  I    + KP+ IQ   I    +G D+I  AQ+G+GKTA F   ILQ L        ALVLAPTRELA QI++   ALG  +GV+    VGG  + +  R L    H++V TPGR+ D L   +      ++  V+DEAD
Sbjct:   48 ETTSEASQD--VNSEQQFHTFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLENTKGFSLKSLQYLVMDEAD 217          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_YEAST (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae GN=DRS1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 55/161 (34.16%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            ++Y++F+++ L   +L+G+ + G+ KPS IQ   I     G D+I  A +G+GKTA F   I+++L Y    +   + +VL PTRELA Q+  V + +  ++ G+     VGG ++R+ +++L++   +V+ TPGR  D +R   S   D +++ V+DEAD
Sbjct:  228 QMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEAD 388          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 55/161 (34.16%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            ++Y++F+++ L   +L+G+ + G+ KPS IQ   I     G D+I  A +G+GKTA F   I+++L Y    +   + +VL PTRELA Q+  V + +  ++ G+     VGG ++R+ +++L++   +V+ TPGR  D +R   S   D +++ V+DEAD
Sbjct:  230 QMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEAD 390          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 63/149 (42.28%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ++    Q  ALVL  TRELA QI         YL   KV    GG +++  + +L+    H+VVGTPGRV  + R + L    ++ F+LDE D+
Sbjct:   53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDK 201          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 72/206 (34.95%), Postives = 106/206 (51.46%), Query Frame = 3
Query:  147 EGSQFDARQYDT-KMNELLSTDGQ------------DFFTSYDEVY---DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            E  + DA   +T K  E LS D +             FF++ D V    D+F  + L   LLR     G++KP+ IQ   I     G D+   A +G+GKTA F    L++L +    +   + L+L PTRELA QI  +++ L  +  +K    VGG SVRE + +L++   +VV TPGR+ D LR   S+  D + + +LDEAD
Sbjct:  118 EEEEEDASDAETDKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 323          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 63/149 (42.28%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +Q   I     G+DVI QA+SG GKTA F    LQQ++    Q  ALVL  TRELA QI         YL   KV    GG +++  + +L+    H+VVGTPGRV  + R + L    ++ F+LDE D+
Sbjct:   53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDK 201          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH56_ORYSJ7.008e-2142.95DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sa... [more]
RH15_ORYSJ7.008e-2142.95DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sa... [more]
DBP5_YARLI7.008e-2137.91ATP-dependent RNA helicase DBP5 OS=Yarrowia lipoly... [more]
SUB2_CRYNE2.039e-2040.40ATP-dependent RNA helicase SUB2 OS=Cryptococcus ne... [more]
RRP3_PICGU2.039e-2037.21ATP-dependent rRNA helicase RRP3 OS=Pichia guillie... [more]
DRS1_YEAST2.663e-2034.16ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DRS1_YEAS72.663e-2034.16ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
RH56_ARATH3.478e-2042.28DEAD-box ATP-dependent RNA helicase 56 OS=Arabidop... [more]
RH28_ARATH3.478e-2034.95DEAD-box ATP-dependent RNA helicase 28 OS=Arabidop... [more]
RH15_ARATH3.478e-2042.28DEAD-box ATP-dependent RNA helicase 15 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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