CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 64/149 (42.95%), Postives = 83/149 (55.70%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ+D Q ALVL TRELA QI YL VKV GG +++ + +L+ H+VVGTPGR+ + R + L ++ F+LDE D+ Sbjct: 58 LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDK 206
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 64/149 (42.95%), Postives = 83/149 (55.70%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ+D Q ALVL TRELA QI YL VKV GG +++ + +L+ H+VVGTPGR+ + R + L ++ F+LDE D+ Sbjct: 58 LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDK 206
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_YARLI (ATP-dependent RNA helicase DBP5 OS=Yarrowia lipolytica GN=DBP5 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 58/153 (37.91%), Postives = 91/153 (59.48%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F+ +GL ENLL+G+YA F KPS IQ++ + ++I Q+QSGTGKT F +L ++D L Q + LAP+RELA+Q V+ + + + H V ++ R + Q ++VGTPG V +L+++ + ++K+FVLDEAD Sbjct: 101 FEDLGLDENLLKGLYAMKFNKPSKIQEKALPLLLSDPPHNMIGQSQSGTGKTGAFSLTMLSRVDPNLKAVQCICLAPSRELARQTLDVVDEMKKFTDITTHLIVPESTERGQKVTSQ----ILVGTPGSVAGLLQKKQIDAKHVKVFVLDEAD 249
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20 Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ LLR I GFE PS +QQ I G DV+ QA+SG GKTA F LQQ++ + ++L TRELA QI+ ++ V+ GGT + DQ IL + H+VVGTPGR ++R + L +K FVLDE D+ Sbjct: 66 LKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDK 216
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20 Identity = 64/172 (37.21%), Postives = 90/172 (52.33%), Query Frame = 3 Query: 192 ELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 E S QD + ++ + +F + L L+ I + KP+ IQ I +G D+I AQ+G+GKTA F ILQ L ALVLAPTRELA QI++ ALG +GV+ VGG + + R L H++V TPGR+ D L + ++ V+DEAD Sbjct: 48 ETTSEASQD--VNSEQQFHTFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLENTKGFSLKSLQYLVMDEAD 217
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_YEAST (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae GN=DRS1 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20 Identity = 55/161 (34.16%), Postives = 97/161 (60.25%), Query Frame = 3 Query: 237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 ++Y++F+++ L +L+G+ + G+ KPS IQ I G D+I A +G+GKTA F I+++L Y + + +VL PTRELA Q+ V + + ++ G+ VGG ++R+ +++L++ +V+ TPGR D +R S D +++ V+DEAD Sbjct: 228 QMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEAD 388
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20 Identity = 55/161 (34.16%), Postives = 97/161 (60.25%), Query Frame = 3 Query: 237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 ++Y++F+++ L +L+G+ + G+ KPS IQ I G D+I A +G+GKTA F I+++L Y + + +VL PTRELA Q+ V + + ++ G+ VGG ++R+ +++L++ +V+ TPGR D +R S D +++ V+DEAD Sbjct: 230 QMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEAD 390
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 63/149 (42.28%), Postives = 82/149 (55.03%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ++ Q ALVL TRELA QI YL KV GG +++ + +L+ H+VVGTPGRV + R + L ++ F+LDE D+ Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDK 201
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 72/206 (34.95%), Postives = 106/206 (51.46%), Query Frame = 3 Query: 147 EGSQFDARQYDT-KMNELLSTDGQ------------DFFTSYDEVY---DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 E + DA +T K E LS D + FF++ D V D+F + L LLR G++KP+ IQ I G D+ A +G+GKTA F L++L + + + L+L PTRELA QI +++ L + +K VGG SVRE + +L++ +VV TPGR+ D LR S+ D + + +LDEAD Sbjct: 118 EEEEEDASDAETDKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 323
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 63/149 (42.28%), Postives = 82/149 (55.03%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ LLR I GFE PS +Q I G+DVI QA+SG GKTA F LQQ++ Q ALVL TRELA QI YL KV GG +++ + +L+ H+VVGTPGRV + R + L ++ F+LDE D+ Sbjct: 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDK 201 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |