CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX19_DICDI (ATP-dependent RNA helicase ddx19 OS=Dictyostelium discoideum GN=helC PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 54/153 (35.29%), Postives = 92/153 (60.13%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 +F+ +GL+ LL+G+YA G+ KPS IQ+ + + + +I Q+QSGTGKTA F G+L +D + QA+ ++PT+ELA Q +V+ +G + +K + V ++ V++GTPG++ + + ++ L ++KM VLDEAD Sbjct: 71 TFEELGLKPELLKGVYAMGYNKPSKIQEAALPIIIQSPNNLIAQSQSGTGKTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNIKPLLYISEIEVPKN-----VTNQVIIGTPGKILENVIKKQLSVKFLKMVVLDEAD 218
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB21_VANPO (ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 71/210 (33.81%), Postives = 101/210 (48.10%), Query Frame = 3 Query: 93 LHFNHHHQSFADMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L ++ + Q A A E S+ DA + N G SY ++ + F L+ L R I GFE PS +QQ I G DV+ QA+SG GKTA F LQQLD + +V+ RELA QI Y+ VK GGT + +D +L + H+VV TPGR+ ++R + + ++K FV+DE D+ Sbjct: 10 LEYSDNEQDIQVDASKAAEPSELDATTAEDASNGDAEKKG-----SYVGIHSTGFKDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDK 214
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_SCHPO (ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe GN=drs1 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 56/158 (35.44%), Postives = 88/158 (55.70%), Query Frame = 3 Query: 243 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 + SF +M L +L+G+ GFE P+ IQ + I G D++ A +G+GKTA F IL++L Y + + L+L PTRELA Q V + + + V C+GG S++ ++ L+ +V+ TPGR D +R Q + I++ V+DEAD Sbjct: 258 HSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEAD 415
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 66/183 (36.07%), Postives = 93/183 (50.82%), Query Frame = 3 Query: 177 DTKMNELLSTDGQDFF---TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQC---QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 D K + + FF + YDE SF M L LL+ I A GF++P+ IQ+ I G D+ A +GTGKTA F +L++L Y Q + LVL PTREL Q+ V R L + + VGG V+ + L+A +++ TPGR+ D L S I++ +LDEAD Sbjct: 193 DRKKKKKKGQEAGGFFEDASQYDENL-SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEAD 374
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_LODEL (ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus GN=SUB2 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20 Identity = 62/151 (41.06%), Postives = 83/151 (54.97%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ LLR I GFE PS +QQ I G DV+ QA+SG GKTA F LQQLD + LV+ TRELA QI Y+ VK GGT V+ D L+ H+VV TPGR+ +++ +++R + +K FV+DE D+ Sbjct: 56 LKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPVKRDIEKLKNKDTCPHIVVATPGRLHALVQEKAIRLNNVKSFVIDECDK 206
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20 Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+E LLR I GFE PS +QQ I +DV+ QA+SG GKTA F L QL+ +C LV+ TRELA QI+ YL VK GGT +++D +L ++ ++VVGTPGR+ ++R + L +K FVLDE D+ Sbjct: 64 LKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDK 214
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_YEAST (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae GN=SUB2 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19 Identity = 70/210 (33.33%), Postives = 102/210 (48.57%), Query Frame = 3 Query: 93 LHFNHHHQSFADMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L ++ + Q A A E + A T+ + +T D SY ++ + F L+ L R I GFE PS +QQ I G DV+ QA+SG GKTA F LQQLD + +V+ RELA QI Y+ VK GGT + +D +L+ H+VV TPGR+ ++R + + ++K FV+DE D+ Sbjct: 10 LEYSDNEQEIQIDASKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDK 219
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_SCLS1 (ATP-dependent RNA helicase sub2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=sub2 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19 Identity = 60/151 (39.74%), Postives = 86/151 (56.95%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ LLR I GFE PS +QQ I G DV+ QA+SG GKTA F LQQ++ + LV+ TRELA QI + ++ VK+ GG + +D +L + H++VGTPGR+ ++R + LR + +K+FVLDE D+ Sbjct: 66 LKPELLRAISWCGFEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRELAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKNPETHPHIIVGTPGRLNALVRDKYLRLNSVKVFVLDECDK 216
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19 Identity = 69/175 (39.43%), Postives = 92/175 (52.57%), Query Frame = 3 Query: 192 ELLSTDGQDFFTSYDEV-YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 E + +GQ S +E SF +G+ E L A F+KP+ IQ++ I +G DVI A++G+GKTA F ILQ L LVLAPTRELA QI + ALG + ++ VGG + L H+VV TPGR+ D L + SLR +K V+DEAD Sbjct: 91 EEATKEGQTELPSKEETPTKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRLLDHLEKTKGFSLRS--LKFLVMDEAD 263
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_VANPO (ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19 Identity = 58/160 (36.25%), Postives = 93/160 (58.13%), Query Frame = 3 Query: 240 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 V+ +F+++ L +L+G+ G+ KPS IQ I G D+I A +G+GKTA F I+++L Y + + +VL PTRELA QI V + +G Y+ G+ VGG ++R+ ++ L+ +V+ TPGR D +R S D +++ V+DEAD Sbjct: 229 VHSTFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKTRPDIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEAD 388 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |