CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  201 STDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-------VQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            S D      S ++   SF A  L   +LR + +  F KP+ IQ R I     G D++  A +G+GKTA F    +++L +          + + L+LAPTRELA Q   V +++  +  ++   CVGG SV+  +  L+    VV+ TPGR+ D +R   S   D I++ V+DEAD
Sbjct:  318 SADSSSKSKSTNDAESSFGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIERLTWRAKTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEAELKLRPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEAD 493          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 59/154 (38.31%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +F + GL   ++  +   G+ +PS IQ   I    KG DV+  AQ+G+GKTA F   +L  +   +   Q LVL PTRELA Q+ +        L GV V A  GG       + L+ G  ++VGTPGR+ D L+R++L    +   VLDEADE
Sbjct:    7 TFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADE 160          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP5_COCIM (ATP-dependent RNA helicase DBP5 OS=Coccidioides immitis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 66/198 (33.33%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  126 DMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQC---QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            D  G   + S+FD    + K+++L +      ++       SF+ +GL E +  G+    F +PS IQ+R +         ++I Q+QSGTGKTA F   IL +L+    +    QALVLAP+RELA+QI  V++A+G ++     A      +  +QR+  +   +VVGTPG V D+++++     ++++ VLDEAD
Sbjct:   60 DQRGSELQDSEFDV---NVKLSDLQADPNNPLYS-----IKSFEELGLAEPIQMGLSKMNFRRPSKIQERALPLLMANPPTNMIAQSQSGTGKTAAFVLNILSRLELTPEKQKSPQALVLAPSRELARQIVGVIQAMGTFVEGLFVATAVPMEMNRNQRVEAS---IVVGTPGTVQDLIKKRLFNTQHLRVLVLDEAD 246          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_PICST (ATP-dependent RNA helicase SUB2 OS=Pichia stipitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAG---VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I     G DV+ QA+SG GKTA F    LQQLD    +   LV+  TRELA QI         Y+  VK     GGT ++ D   L++     H+VV TPGR+  ++  +++R   +K FV+DE D+
Sbjct:   56 LKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKSKDTCPHIVVATPGRLHALVNEKAIRLSNVKSFVIDECDK 206          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_DEBHA (ATP-dependent RNA helicase SUB2 OS=Debaryomyces hansenii GN=SUB2 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 63/151 (41.72%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I     G DV+ QA+SG GKTA F    LQQLD    +   LV+  TRELA QI         Y+  VK     GGT +  D   L+      H+VV TPGR+  ++  +S+R + IK FV+DE D+
Sbjct:   58 LKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPITRDLEKLKNKDTCPHIVVATPGRLHALVTEKSIRLNNIKSFVIDECDK 208          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_NEUCR (ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 65/180 (36.11%), Postives = 95/180 (52.78%), Query Frame = 3
Query:  177 DTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            + KM E  + + ++      E+  SF  M L   +LRG+ + GF KP+ IQ + I     G DV+  A +G+GKTA F   IL++L Y    +   + ++L PTRELA Q   V   L  +  +K    VGG S++  +  L+    VV+ TPGR  D +R   S   D I++ VLDEAD
Sbjct:  271 EAKMKEFFAPEEENQPKKKGEM-SSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEAD 449          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 62/156 (39.74%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            SF+ + L+  LL+G+YA GF +PS IQ+  +         ++I Q+QSGTGKTA F   +L Q++      Q L L+PT ELA Q  KV+  +G  Y  +K+   V G  +   Q+I +    +V+GTPG V D   + + + P  IK+FVLDEAD
Sbjct:   93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE---QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DD19A_BOVIN (ATP-dependent RNA helicase DDX19A OS=Bos taurus GN=DDX19A PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 61/156 (39.10%), Postives = 91/156 (58.33%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            SF+ + L+  LL+G+YA GF +PS IQ+  +         ++I Q+QSGTGKTA F   +L +++      Q L L+PT ELA Q  KV+  +G +   +K+   V G  +   Q+I +   H+V+GTPG V D   + + + P  IK+FVLDEAD
Sbjct:   92 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKISE---HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 244          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_SCHPO (ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces pombe GN=dbp10 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 57/154 (37.01%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--QCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            +F +MGL + LLR I+  GF+ P+ IQ++ I    +G DV+  A++G+GKTA F   +++ L   L     +AL+L+P RELA Q  KV++       ++  A VGG S+ E   +L     +VV TPGR   +     L    I+  V DEAD
Sbjct:   70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEAD 223          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_CHAGB (ATP-dependent RNA helicase DBP10 OS=Chaetomium globosum GN=DBP10 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F AMGL  NLLR I   GF  P+ IQ++ I    +  DV+  A++G+GKTA F   ++++L      V  +A++++P+RELA Q  KV++ LG    +K    VGG S+ E   ++ A   +++ TPGR   +    SL    ++  V DEAD
Sbjct:   88 FQAMGLNSNLLRAISRKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELGKGTDLKTVLLVGGDSLEEQFGLMAANPDIIIATPGRFLHLKVEMSLNLSSVRYVVFDEAD 240          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_USTMA1.012e-1934.09ATP-dependent RNA helicase DRS1 OS=Ustilago maydis... [more]
DEAD_BUCBP1.012e-1938.31Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DBP5_COCIM1.012e-1933.33ATP-dependent RNA helicase DBP5 OS=Coccidioides im... [more]
SUB2_PICST1.322e-1940.40ATP-dependent RNA helicase SUB2 OS=Pichia stipitis... [more]
SUB2_DEBHA1.322e-1941.72ATP-dependent RNA helicase SUB2 OS=Debaryomyces ha... [more]
DRS1_NEUCR1.322e-1936.11ATP-dependent RNA helicase drs-1 OS=Neurospora cra... [more]
DD19B_HUMAN1.322e-1939.74ATP-dependent RNA helicase DDX19B OS=Homo sapiens ... [more]
DD19A_BOVIN1.322e-1939.10ATP-dependent RNA helicase DDX19A OS=Bos taurus GN... [more]
DBP10_SCHPO1.322e-1937.01ATP-dependent RNA helicase dbp10 OS=Schizosaccharo... [more]
DBP10_CHAGB1.322e-1936.60ATP-dependent RNA helicase DBP10 OS=Chaetomium glo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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