CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I      +DV+ QA+SG GKTA F    L QL+    +C  LV+  TRELA QI+        YL  VK     GGT +++D  +L   ++  ++VVGTPGR+  ++R + L    +K FVLDE D+
Sbjct:   65 LKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDK 215          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I      +DV+ QA+SG GKTA F    L QL+    +C  LV+  TRELA QI+        YL  VK     GGT +++D  +L   ++  ++VVGTPGR+  ++R + L    +K FVLDE D+
Sbjct:   65 LKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDK 215          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: H669_METJA (Probable ATP-dependent RNA helicase MJ0669 OS=Methanocaldococcus jannaschii GN=MJ0669 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 55/156 (35.26%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  243 YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            Y +F+ + L +N+L  I   GFEKP+ IQ + I  F     +++ QA++G+GKTA+F   +++ ++      +A++L PTRELA Q+   + +L     +K+    GG ++    + L+   ++VVGTPGR+ D + R +L    +K F+LDEADE
Sbjct:    5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN-GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_GIBZE (ATP-dependent RNA helicase DRS1 OS=Gibberella zeae GN=DRS1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            SF  M L   ++RG+ + GF KP+ IQ + I     G DV+  A++G+GKT  F   IL++L Y    +   + +VL PTRELA Q   V   L  +  +K    VGG S++  +  L+    V++ TPGR  D +R   S   D +++ VLDEAD
Sbjct:  257 SFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLKAQELELKLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEAD 412          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_CANGA (ATP-dependent RNA helicase DRS1 OS=Candida glabrata GN=DRS1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 61/193 (31.61%), Postives = 105/193 (54.40%), Query Frame = 3
Query:  162 DARQYDTKMNELLSTDGQDFFT-------SYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            DA   + K+ E  + + Q F+        +  EV+ +F+ + L   +++G+   G+ KPS IQ   I     G D+I  A +G+GKTA F   I+++L Y    +   + +VL PTRELA Q+  V + +G ++  +     VGG ++R+ +++L+    +V+ TPGR  D +R   S   D +++ V+DEAD
Sbjct:  171 DAGDAEEKVEEDTAEEMQAFYAPESESENAKKEVHKTFNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKTRPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEAD 363          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX27_BOVIN (Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 61/164 (37.20%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQC---QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            + YDE   SF  M L   LL+ I A GF++P+ IQ+  I     G D+   A +GTGKTA F   +L++L Y   Q    + LVL PTREL  Q+  V + L  +  +     VGG  V+  +  L+A   +++ TPGR+ D L    S     I++ +LDEAD
Sbjct:  181 SQYDENL-SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEAD 343          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBPA_ECOLI (ATP-independent RNA helicase dbpA OS=Escherichia coli (strain K12) GN=dbpA PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  282 LRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            L  +   G+   + +Q   +     G DV  QA++G+GKTA F  G+LQQ+D  L Q QALVL PTRELA Q+   +R L  +L   K+    GG      +  LQ   H++V TPGR+ D L++ ++  D +   V+DEAD
Sbjct:   15 LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEAD 156          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I      +DV+ QA+SG GKTA F    L QL+    +C  LV+  TRELA QI+        YL  VK     GGT +++D  +L   ++  ++VVGTPGR+  ++R + L    +K FVLDE D+
Sbjct:   65 LKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDK 215          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 62/151 (41.06%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I      +DV+ QA+SG GKTA F    L QL+    +C  LV+  TRELA QI+        YL  VK     GGT +++D  +L   ++  ++VVGTPGR+  ++R + L    +K FVLDE D+
Sbjct:   65 LKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDK 215          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 64/163 (39.26%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  225 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            T  +EV  SF  +G+ ++L       G++ P+ IQ+  I    +G D+I  A++G+GKTA F   ILQ L         LVLAPTRELA QI +   ALG  + VK    VGG  +      L    H++V TPGR+ D L      SLR   +K  V+DEAD
Sbjct:   49 TEEEEVTKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKPQPLFGLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPHIIVATPGRLLDHLENTKGFSLRS--LKYLVMDEAD 209          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB2_NEOFI1.726e-1941.06ATP-dependent RNA helicase sub2 OS=Neosartorya fis... [more]
SUB2_ASPFU1.726e-1941.06ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]
H669_METJA1.726e-1935.26Probable ATP-dependent RNA helicase MJ0669 OS=Meth... [more]
DRS1_GIBZE1.726e-1937.18ATP-dependent RNA helicase DRS1 OS=Gibberella zeae... [more]
DRS1_CANGA1.726e-1931.61ATP-dependent RNA helicase DRS1 OS=Candida glabrat... [more]
DDX27_BOVIN1.726e-1937.20Probable ATP-dependent RNA helicase DDX27 OS=Bos t... [more]
DBPA_ECOLI1.726e-1938.73ATP-independent RNA helicase dbpA OS=Escherichia c... [more]
SUB2_ASPOR2.255e-1941.06ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]
SUB2_ASPCL2.255e-1941.06ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
RRP3_SCLS12.255e-1939.26ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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