CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 69/196 (35.20%), Postives = 99/196 (50.51%), Query Frame = 3
Query:  153 SQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-----DYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            S  D    D   N + + DG++   S          + L + L   +   G      IQ+  +VP  +G D+I +A++GTGKT  F   I+++L     DY   +        LVLAPTRELA+Q+EK ++    YL      CV GG S    Q  L  GV VVVGTPGR+ D++  +SL+   ++  VLDEAD+
Sbjct:   80 SDHDEYDLDGDNNNVEADDGEELAIS---------KLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLST---VCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQ 263          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: PRP28_LODEL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus GN=PRP28 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 62/167 (37.13%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--------DYGLVQCQ--ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE-----DQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            S+D  GL   +L  + ++GF +P+ +Q+  I    +  DV+  A++G+GKT  F   +L  L        +Y  V+ +  ALVLAPTRELA QI +     G  LG  V + +GG   +E     D  I+  GVH+VVGTPGR+ D + R+ L        V+DEAD
Sbjct:  186 SWDESGLDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEAD 352          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_KLULA (ATP-dependent RNA helicase DRS1 OS=Kluyveromyces lactis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 56/160 (35.00%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  240 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            V+ +F+++ L   +L+G+ + G+  PS IQ   I     G D+I  A +G+GKTA F   I+++L Y    +   + +VL PTRELA Q+  V + +G ++ G+     VGG ++R+ ++ L+    +V+ TPGR  D LR   S   D +++ V+DEAD
Sbjct:  231 VHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEAD 390          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 61/201 (30.35%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  123 ADMAGLAPEGSQFDARQYDTKMNELLS--TDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            ADM    P   Q D +  +    ++     D ++  T+  +++ +F ++ L   +L+G+   G+ KPS IQ   I     G D++  A +G+GKTA +   I+++L Y    +   + +VLAPTRELA Q+  V + +G ++  +     VGG ++R+ ++ L+    +V+ TPGR+ D +R   S   D +++ V+DEAD
Sbjct:  215 ADMDEEYPGSDQEDEKPVEDTAEDMAEFYADEEEATTAKKQLHTTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSIDSLEVLVIDEAD 415          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 63/170 (37.06%), Postives = 89/170 (52.35%), Query Frame = 3
Query:  219 FFTSYDEVYD---SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQC---QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADE 707
            FF    E YD   SF  M L   LL+ I A GF++P+ IQ+  I     G D+   A +GTGKTA F   +L++L Y   Q    + LVL PTREL  Q+  V + L  +  +     VGG  V+  +  L+A   +++ TPGR+ D L    S     I++ +LDEAD+
Sbjct:  173 FFEDASE-YDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADK 341          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 53/155 (34.19%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP---DYIKMFVLDEAD 704
            +F+++GL   L+  + +   +KP+ IQ   + P   G D I  A++G+GKT  F   I++++        A+VL PTRELA Q+ +    +G  LG+     VGG  + +  + L+A  H++V TPGR+ D+LR   + P     ++  VLDEAD
Sbjct:  153 TFESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLGLTTATIVGGMDMMKQAQELEARPHIIVATPGRLCDLLRSGGVGPGKLSRVRTLVLDEAD 307          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            SF    L   LL  I +  + +P+ IQ   I    +G D++  A++G+GKTA F   ILQ L        ALVLAPTRELA QI++   ALG  +G++    +GG S+ E  R L    HV++ TPGR+ D L   +      ++  V+DE D
Sbjct:   99 SFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRKPHVIIATPGRLIDHLEHTKGFSLKKLQYLVMDEVD 251          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 69/197 (35.03%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  123 ADMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            +D+   + E SQ    +  T  NE    D        + V  SF  +G+ ++L     A G++ P+ IQ   I    +G D+I  A++G+GKTA F   ILQ L         L+LAPTRELA QI +   ALG  + V+    VGG  +      L    H++V TPGR+ D L      SLR   +K  V+DEAD
Sbjct:   20 SDLESSSSEASQQSHDEQLTAANE--QDDESPQVQREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLDHLENTKGFSLRS--LKYLVMDEAD 212          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_YARLI (ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica GN=DRS1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 56/162 (34.57%), Postives = 93/162 (57.41%), Query Frame = 3
Query:  234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            + V+ +F  + L   +++GI A G++ P+ IQ R I     G D++  A +G+GKTA +   +L++L Y    +   + +VL PTREL+ Q+  V + L  Y+ GV+    VGG ++R  ++ L+    VV+ TPGR  D +R   S   D +++ V+DEAD
Sbjct:  248 ESVHKTFQTLNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKVAATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKTRPEVVIATPGRFIDHVRNSPSFNVDDVEILVIDEAD 409          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_ASPTN (ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=drs1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 63/188 (33.51%), Postives = 94/188 (50.00%), Query Frame = 3
Query:  153 SQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            S+ DA + + K     + + +      D    SF    L   +LRG+ A  F  P+ IQ++ I     G D++  A +G+GKTA F   IL++L +    +   +  +L PTRELA Q   V   L  Y  +     VGG S+RE + IL+    V++ TPGR  D +R   S   D +++ VLDEAD
Sbjct:  274 SEIDAEEQE-KRKAFFAPEEEKTKEQADGAQRSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEAD 460          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH3_ARATH2.255e-1935.20DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
PRP28_LODEL2.255e-1937.13Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DRS1_KLULA2.255e-1935.00ATP-dependent RNA helicase DRS1 OS=Kluyveromyces l... [more]
DRS1_DEBHA2.255e-1930.35ATP-dependent RNA helicase DRS1 OS=Debaryomyces ha... [more]
DDX27_MOUSE2.255e-1937.06Probable ATP-dependent RNA helicase DDX27 OS=Mus m... [more]
DBP8_CRYNE2.255e-1934.19ATP-dependent RNA helicase DBP8 OS=Cryptococcus ne... [more]
RRP3_LODEL2.945e-1937.91ATP-dependent rRNA helicase RRP3 OS=Lodderomyces e... [more]
RRP3_AJECN2.945e-1935.03ATP-dependent rRNA helicase RRP3 OS=Ajellomyces ca... [more]
DRS1_YARLI2.945e-1934.57ATP-dependent RNA helicase DRS1 OS=Yarrowia lipoly... [more]
DRS1_ASPTN2.945e-1933.51ATP-dependent RNA helicase drs1 OS=Aspergillus ter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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