CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19 Identity = 69/196 (35.20%), Postives = 99/196 (50.51%), Query Frame = 3 Query: 153 SQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-----DYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 S D D N + + DG++ S + L + L + G IQ+ +VP +G D+I +A++GTGKT F I+++L DY + LVLAPTRELA+Q+EK ++ YL CV GG S Q L GV VVVGTPGR+ D++ +SL+ ++ VLDEAD+ Sbjct: 80 SDHDEYDLDGDNNNVEADDGEELAIS---------KLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLST---VCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQ 263
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: PRP28_LODEL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Lodderomyces elongisporus GN=PRP28 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19 Identity = 62/167 (37.13%), Postives = 90/167 (53.89%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--------DYGLVQCQ--ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE-----DQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 S+D GL +L + ++GF +P+ +Q+ I + DV+ A++G+GKT F +L L +Y V+ + ALVLAPTRELA QI + G LG V + +GG +E D I+ GVH+VVGTPGR+ D + R+ L V+DEAD Sbjct: 186 SWDESGLDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEAD 352
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_KLULA (ATP-dependent RNA helicase DRS1 OS=Kluyveromyces lactis GN=DRS1 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19 Identity = 56/160 (35.00%), Postives = 93/160 (58.13%), Query Frame = 3 Query: 240 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 V+ +F+++ L +L+G+ + G+ PS IQ I G D+I A +G+GKTA F I+++L Y + + +VL PTRELA Q+ V + +G ++ G+ VGG ++R+ ++ L+ +V+ TPGR D LR S D +++ V+DEAD Sbjct: 231 VHKTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEAD 390
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19 Identity = 61/201 (30.35%), Postives = 109/201 (54.23%), Query Frame = 3 Query: 123 ADMAGLAPEGSQFDARQYDTKMNELLS--TDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 ADM P Q D + + ++ D ++ T+ +++ +F ++ L +L+G+ G+ KPS IQ I G D++ A +G+GKTA + I+++L Y + + +VLAPTRELA Q+ V + +G ++ + VGG ++R+ ++ L+ +V+ TPGR+ D +R S D +++ V+DEAD Sbjct: 215 ADMDEEYPGSDQEDEKPVEDTAEDMAEFYADEEEATTAKKQLHTTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSIDSLEVLVIDEAD 415
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19 Identity = 63/170 (37.06%), Postives = 89/170 (52.35%), Query Frame = 3 Query: 219 FFTSYDEVYD---SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQC---QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADE 707 FF E YD SF M L LL+ I A GF++P+ IQ+ I G D+ A +GTGKTA F +L++L Y Q + LVL PTREL Q+ V + L + + VGG V+ + L+A +++ TPGR+ D L S I++ +LDEAD+ Sbjct: 173 FFEDASE-YDKSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADK 341
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19 Identity = 53/155 (34.19%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP---DYIKMFVLDEAD 704 +F+++GL L+ + + +KP+ IQ + P G D I A++G+GKT F I++++ A+VL PTRELA Q+ + +G LG+ VGG + + + L+A H++V TPGR+ D+LR + P ++ VLDEAD Sbjct: 153 TFESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLGLTTATIVGGMDMMKQAQELEARPHIIVATPGRLCDLLRSGGVGPGKLSRVRTLVLDEAD 307
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19 Identity = 58/153 (37.91%), Postives = 82/153 (53.59%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 SF L LL I + + +P+ IQ I +G D++ A++G+GKTA F ILQ L ALVLAPTRELA QI++ ALG +G++ +GG S+ E R L HV++ TPGR+ D L + ++ V+DE D Sbjct: 99 SFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRKPHVIIATPGRLIDHLEHTKGFSLKKLQYLVMDEVD 251
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19 Identity = 69/197 (35.03%), Postives = 96/197 (48.73%), Query Frame = 3 Query: 123 ADMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 +D+ + E SQ + T NE D + V SF +G+ ++L A G++ P+ IQ I +G D+I A++G+GKTA F ILQ L L+LAPTRELA QI + ALG + V+ VGG + L H++V TPGR+ D L SLR +K V+DEAD Sbjct: 20 SDLESSSSEASQQSHDEQLTAANE--QDDESPQVQREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRLLDHLENTKGFSLRS--LKYLVMDEAD 212
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_YARLI (ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica GN=DRS1 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19 Identity = 56/162 (34.57%), Postives = 93/162 (57.41%), Query Frame = 3 Query: 234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 + V+ +F + L +++GI A G++ P+ IQ R I G D++ A +G+GKTA + +L++L Y + + +VL PTREL+ Q+ V + L Y+ GV+ VGG ++R ++ L+ VV+ TPGR D +R S D +++ V+DEAD Sbjct: 248 ESVHKTFQTLNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKVAATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKTRPEVVIATPGRFIDHVRNSPSFNVDDVEILVIDEAD 409
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_ASPTN (ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=drs1 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19 Identity = 63/188 (33.51%), Postives = 94/188 (50.00%), Query Frame = 3 Query: 153 SQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 S+ DA + + K + + + D SF L +LRG+ A F P+ IQ++ I G D++ A +G+GKTA F IL++L + + + +L PTRELA Q V L Y + VGG S+RE + IL+ V++ TPGR D +R S D +++ VLDEAD Sbjct: 274 SEIDAEEQE-KRKAFFAPEEEKTKEQADGAQRSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEAD 460 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |