CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_ASPNC (ATP-dependent RNA helicase drs1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=drs1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = 3
Query:  147 EGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            E SQ DA + + +       + +   ++  +   SF    L   +LRG+    F  P+ IQ++ I     G D++  A +G+GKTA F   IL++L +    +   +  +L PTRELA Q   V   L  Y  +     VGG S+RE + IL+    V++ TPGR  D +R   S   D +++ VLDEAD
Sbjct:  276 EESQVDAEEEEKRKAFFAPEEEKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEAD 465          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: YFML_BACSU (Putative ATP-dependent RNA helicase yfmL OS=Bacillus subtilis GN=yfmL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 47/137 (34.31%), Postives = 84/137 (61.31%), Query Frame = 3
Query:  297 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            A GF+KP+ +Q++       G DVI ++ +GTGKT  +   +L+++       QA++LAP+REL  QI +V++       ++  + +GG +V++    L+   H++VGTPGRVF++++ + L+   +K  VLDE D+
Sbjct:   21 ASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQ 157          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_YEAS7 (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SUB2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 69/210 (32.86%), Postives = 101/210 (48.10%), Query Frame = 3
Query:   93 LHFNHHHQSFADMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L ++ + Q     A  A E  +  A    T+ +   +    D   SY  ++ + F    L+  L R I   GFE PS +QQ  I     G DV+ QA+SG GKTA F    LQQLD    +   +V+   RELA QI         Y+  VK     GGT + +D  +L+      H+VV TPGR+  ++R + +   ++K FV+DE D+
Sbjct:   10 LEYSDNEQEIQIDASKAAEAGETGAATSATEGDNNNNAAAGDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDK 219          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_EMENI (ATP-dependent RNA helicase sub2 OS=Emericella nidulans GN=sub2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 70/181 (38.67%), Postives = 96/181 (53.04%), Query Frame = 3
Query:  183 KMNELLSTDGQ-DFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            K  EL  T G+ D   SY  ++ + F    L+  LLR I   GFE PS +QQ  I      +DV+ QA+SG GKTA F    L QL+    +C  LV+  TRELA QI+        YL  VK     GGT +++D  +L       +++VGTPGR+  ++R + L    +K FVLDE D+
Sbjct:   36 KDGELTVTGGRADKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNIIVGTPGRLNALVRDKKLSLRNVKAFVLDECDK 216          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_ASHGO (ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii GN=SUB2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 60/151 (39.74%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  L R I   GFE PS +QQ  I     G DV+ QA+SG GKTA F    LQQLD    +   +VL   RELA QI         Y+  VK     GGT  R+D  +L+      H+VV TPGR+  ++R  ++   ++K FV+DE D+
Sbjct:   61 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDIELLKNKDTAPHIVVATPGRLKALVRDNNIDLSHVKNFVIDECDK 211          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: MAK5_SCHPO (ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces pombe GN=mak5 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 64/189 (33.86%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  150 GSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY--IKMFVLDEAD 704
            GS+  ++ Y    NE  + + +D   S+     ++    L   +L  +   GF KP  IQ   I     G D+I +A +G+GKT  F   IL+    +      QALV+APTRELA QI +    +     ++V +  GG +V++ QR+L    HVVV TPGR++ ++   +L  ++  IK  VLDEAD
Sbjct:   94 GSKVTSKNY----NEFSTLEEEDEHNSHGVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEAD 278          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            SF  M L   +LRG+ + GF KP+ IQ + I     G DV+  A +G+GKTA F   IL++L Y    +   + +VL PTRELA Q   V   L  +  +K    VGG S++  +  L+    VV+ TPGR  D +R   S   + +++ VLDEAD
Sbjct:  277 SFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEAD 432          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBPA_BACSU (ATP-dependent RNA helicase dbpA OS=Bacillus subtilis GN=dbpA PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 50/147 (34.01%), Postives = 89/147 (60.54%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +  ++LR +   G+ +P+ +QQ  I    +  D++ ++Q+G+GKTA+F   + +  ++   + QAL+L PTRELA Q+++ +  +G +  +K  A  G +S  + +  L+   H+VVGTPGRV D + + +L  D +   V+DEADE
Sbjct:    9 ISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADE 155          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_ASPNC (ATP-dependent RNA helicase dbp10 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp10 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA--LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F AMGL  NLL+ I   GF  P+ IQ++ I    +  DV+  A++G+GKTA F   ++Q+L     Q  A  L+L+P+RELA Q  KV++ LG    +K    VGG S+ E   ++     +V+ TPGR   +    +L    I+  V DEAD
Sbjct:   92 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELGKGTDLKAVLLVGGDSLEEQFSMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRYVVFDEAD 244          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 63/151 (41.72%), Postives = 84/151 (55.63%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAG---VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I      +DV+ QA+SG GKTA F    L QL+    +C  LV+  TRELA QI+        YL  VK     GGT +++D  +L +     ++VVGTPGR+  ++R + L    IK FVLDE D+
Sbjct:   67 LKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDK 217          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_ASPNC2.945e-1932.63ATP-dependent RNA helicase drs1 OS=Aspergillus nig... [more]
YFML_BACSU3.846e-1934.31Putative ATP-dependent RNA helicase yfmL OS=Bacill... [more]
SUB2_YEAS73.846e-1932.86ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_EMENI3.846e-1938.67ATP-dependent RNA helicase sub2 OS=Emericella nidu... [more]
SUB2_ASHGO3.846e-1939.74ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii... [more]
MAK5_SCHPO3.846e-1933.86ATP-dependent RNA helicase mak5 OS=Schizosaccharom... [more]
DRS1_CHAGB3.846e-1938.46ATP-dependent RNA helicase DRS1 OS=Chaetomium glob... [more]
DBPA_BACSU3.846e-1934.01ATP-dependent RNA helicase dbpA OS=Bacillus subtil... [more]
DBP10_ASPNC3.846e-1937.91ATP-dependent RNA helicase dbp10 OS=Aspergillus ni... [more]
SUB2_COCIM5.023e-1941.72ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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