CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 60/160 (37.50%), Postives = 85/160 (53.12%), Query Frame = 3
Query:  234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            +E   +F  +G+ +++        F KP+ IQ + I    +G D+I  AQ+G+GKTA F   +LQ L         +VLAPTRELA QI +   ALG  +G++    VGG ++      L    HV+V TPGR+ D L      SLR   +K  V+DEAD
Sbjct:   60 EEQTKTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVDHLENTKGFSLRT--LKFLVMDEAD 217          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_COCIM (ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            +F    L   +LRG+ A GF  P+ IQ++ I     G D++  A +G+GKTA F   IL++L Y    +   +  +L PTRELA Q   V   L  Y  +     VGG S+RE + +L+    V++ TPGR  D +R   S   D +++ VLDEAD
Sbjct:  320 TFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEAD 475          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 61/156 (39.10%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            SF+ + L+  LL+G+YA GF +PS IQ+  +         ++I Q+QSGTGKTA F   +L +++      Q L L+PT ELA Q  KV+  +G  Y  +K+   V G  +   Q+I +    +V+GTPG V D   + + + P  IK+FVLDEAD
Sbjct:   92 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE---QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 244          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 65/155 (41.94%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY----GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L++ L+R I   GFE PS +QQ  I     G DV+ QA+SG GKTA F    LQQ+D     G+     LV+  TRELA QI         +L  VKV    GGT V +D  +L       H++VGTPGR+  ++R + LR   +K FVLDE D+
Sbjct:   59 LKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGV--ASILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDK 211          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 60/151 (39.74%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I     G DV+ QA+SG GKTA F    LQQ++    +   LVL  TRELA QI+        YL  V+     GG ++++D    +      H+VV TPGR+  ++R + L+ + +K FVLDE D+
Sbjct:   58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PASMU (ATP-dependent RNA helicase rhlB OS=Pasteurella multocida GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 60/156 (38.46%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKT-----ATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F  + L   +L  +   GF+  + IQ   +     G DV  QAQ+GTGKT     ATF   + QQ D G  Q +AL+LAPTRELA QI      L    G+K     GG    +  + ++ GV +++GT GRV D +++  +R D I++ VLDEAD
Sbjct:   11 FSDLPLHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKTMAFLTATFHHLLTQQGDKGGRQPRALILAPTRELAVQINNDAALLTKATGLKTGLAYGGDGYEKQLKAIEQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEAD 166          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 58/156 (37.18%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  261 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-----DYGLVQC-QALVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +G+   +++ +   G EK   IQ+  + P  +G D+I +A++GTGKT  F   I+ ++      +G  +  Q LVLAPTRELA+Q+EK  R     L      C+ GGT + +  R L  G+ V VGTPGR+ D+++R +L    ++  VLDEAD+
Sbjct:  121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDT---ICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQ 273          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_ASPOR (ATP-dependent RNA helicase drs1 OS=Aspergillus oryzae GN=drs1 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            SF    L   +LRG+ A  F  P+ IQ++ I     G D++  A +G+GKTA F   IL++L +    +   +  +L PTRELA Q   V   L  Y  +     VGG S+RE + IL+    V++ TPGR  D +R   S   D +++ VLDEAD
Sbjct:  303 SFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEAD 458          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 65/182 (35.71%), Postives = 93/182 (51.10%), Query Frame = 3
Query:  180 TKMNELLSTDGQ-DFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            T  NE    +G+ D   SY  ++ + F    L+  L R I   GFE PS +QQ  I     G DV+ QA+SG GKTA F    LQQLD    +   +V+   RELA QI         Y+  V+     GGT + +D  +L+      H+VV TPGR+  ++R + +   ++K FV+DE D+
Sbjct:   31 TTENEATQENGEADKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVRTAVFYGGTPIAKDAELLKNKDTAPHIVVATPGRLKALVRDKMIDLSHVKNFVIDECDK 212          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 58/151 (38.41%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  L R I   GFE PS +QQ  I     G DV+ QA+SG GKTA F    LQQLD    +   +V+   RELA QI         Y+  VK     GGT + +D  +L   +   H+VV TPGR+  ++R + +   ++K FV+DE D+
Sbjct:   65 LKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDK 215          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_YARLI5.023e-1937.50ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipol... [more]
DRS1_COCIM5.023e-1937.18ATP-dependent RNA helicase DRS1 OS=Coccidioides im... [more]
DD19A_HUMAN5.023e-1939.10ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
SUB2_PHANO6.560e-1941.94ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria n... [more]
SUB2_SCHPO8.567e-1939.74ATP-dependent RNA helicase uap56 OS=Schizosaccharo... [more]
RHLB_PASMU8.567e-1938.46ATP-dependent RNA helicase rhlB OS=Pasteurella mul... [more]
RH9_ARATH8.567e-1937.18DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
DRS1_ASPOR8.567e-1937.18ATP-dependent RNA helicase drs1 OS=Aspergillus ory... [more]
SUB2_CANGA1.119e-1835.71ATP-dependent RNA helicase SUB2 OS=Candida glabrat... [more]
SUB22_VANPO1.119e-1838.41ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
back to top