CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19 Identity = 60/160 (37.50%), Postives = 85/160 (53.12%), Query Frame = 3 Query: 234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 +E +F +G+ +++ F KP+ IQ + I +G D+I AQ+G+GKTA F +LQ L +VLAPTRELA QI + ALG +G++ VGG ++ L HV+V TPGR+ D L SLR +K V+DEAD Sbjct: 60 EEQTKTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVDHLENTKGFSLRT--LKFLVMDEAD 217
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_COCIM (ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis GN=DRS1 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19 Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 +F L +LRG+ A GF P+ IQ++ I G D++ A +G+GKTA F IL++L Y + + +L PTRELA Q V L Y + VGG S+RE + +L+ V++ TPGR D +R S D +++ VLDEAD Sbjct: 320 TFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEAD 475
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19 Identity = 61/156 (39.10%), Postives = 90/156 (57.69%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 SF+ + L+ LL+G+YA GF +PS IQ+ + ++I Q+QSGTGKTA F +L +++ Q L L+PT ELA Q KV+ +G Y +K+ V G + Q+I + +V+GTPG V D + + + P IK+FVLDEAD Sbjct: 92 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE---QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 244
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19 Identity = 65/155 (41.94%), Postives = 85/155 (54.84%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY----GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L++ L+R I GFE PS +QQ I G DV+ QA+SG GKTA F LQQ+D G+ LV+ TRELA QI +L VKV GGT V +D +L H++VGTPGR+ ++R + LR +K FVLDE D+ Sbjct: 59 LKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGV--ASILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDK 211
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 60/151 (39.74%), Postives = 83/151 (54.97%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ LLR I GFE PS +QQ I G DV+ QA+SG GKTA F LQQ++ + LVL TRELA QI+ YL V+ GG ++++D + H+VV TPGR+ ++R + L+ + +K FVLDE D+ Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PASMU (ATP-dependent RNA helicase rhlB OS=Pasteurella multocida GN=rhlB PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 60/156 (38.46%), Postives = 84/156 (53.85%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKT-----ATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F + L +L + GF+ + IQ + G DV QAQ+GTGKT ATF + QQ D G Q +AL+LAPTRELA QI L G+K GG + + ++ GV +++GT GRV D +++ +R D I++ VLDEAD Sbjct: 11 FSDLPLHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKTMAFLTATFHHLLTQQGDKGGRQPRALILAPTRELAVQINNDAALLTKATGLKTGLAYGGDGYEKQLKAIEQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEAD 166
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 58/156 (37.18%), Postives = 90/156 (57.69%), Query Frame = 3 Query: 261 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-----DYGLVQC-QALVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +G+ +++ + G EK IQ+ + P +G D+I +A++GTGKT F I+ ++ +G + Q LVLAPTRELA+Q+EK R L C+ GGT + + R L G+ V VGTPGR+ D+++R +L ++ VLDEAD+ Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDT---ICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQ 273
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_ASPOR (ATP-dependent RNA helicase drs1 OS=Aspergillus oryzae GN=drs1 PE=3 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 SF L +LRG+ A F P+ IQ++ I G D++ A +G+GKTA F IL++L + + + +L PTRELA Q V L Y + VGG S+RE + IL+ V++ TPGR D +R S D +++ VLDEAD Sbjct: 303 SFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEAD 458
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 65/182 (35.71%), Postives = 93/182 (51.10%), Query Frame = 3 Query: 180 TKMNELLSTDGQ-DFFTSYDEVYDS-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 T NE +G+ D SY ++ + F L+ L R I GFE PS +QQ I G DV+ QA+SG GKTA F LQQLD + +V+ RELA QI Y+ V+ GGT + +D +L+ H+VV TPGR+ ++R + + ++K FV+DE D+ Sbjct: 31 TTENEATQENGEADKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVRTAVFYGGTPIAKDAELLKNKDTAPHIVVATPGRLKALVRDKMIDLSHVKNFVIDECDK 212
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 58/151 (38.41%), Postives = 80/151 (52.98%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ L R I GFE PS +QQ I G DV+ QA+SG GKTA F LQQLD + +V+ RELA QI Y+ VK GGT + +D +L + H+VV TPGR+ ++R + + ++K FV+DE D+ Sbjct: 65 LKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDK 215 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |