CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 62/155 (40.00%), Postives = 82/155 (52.90%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 +F +G+ E L G++ P+ IQ+ I KG D+I A++G+GKTA F ILQ L LVLAPTRELA QI K +LG +GV+ VGG + L H++V TPGR+ D L SLR +K V+DEAD Sbjct: 49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLENTKGFSLR--NLKYLVMDEAD 201
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 261 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +G+ +++ + + G EK IQ+ + P +G D+I +A++GTGKT F I+ ++ Y + LVLAPTRELA+Q+EK R L C+ GGT + + R L GV V VGTPGRV D+++R +L ++ VLDEAD+ Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDT---ICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQ 261
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 65/173 (37.57%), Postives = 92/173 (53.18%), Query Frame = 3 Query: 225 TSYDEV---YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----SGILQ----QLDYG--LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 TS D V ++F + L E L I + KP+ +Q+ I +G D++ AQ+G+GKTA FC SGI++ Q G V A++L+PTRELA QI + GVKV GGT + + R L+ GV ++V TPGR+ D+L R + I+ LDEAD Sbjct: 149 TSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEAD 321
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH21_ARATH (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 65/198 (32.83%), Postives = 96/198 (48.48%), Query Frame = 3 Query: 162 DARQYDTKMNELLSTDGQDFFTSYDEVYD---------SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ--------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 D D ++ E+ D + F ++ Y S++ L LL+ + G++KPS IQ I + DVI A++G+GKTA F +L + + A+V+APTRELAQQIE+ YLG +V + VGG S+ E + G +V+ TPGR+ D L R+ + VLDEAD Sbjct: 276 DRHWSDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 473
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_PICST (ATP-dependent RNA helicase DRS1 OS=Pichia stipitis GN=DRS1 PE=3 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 55/171 (32.16%), Postives = 98/171 (57.31%), Query Frame = 3 Query: 207 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 D ++ ++ +V+ +F + L +L+G+ G+ KPS IQ I G D++ A +G+GKTA + I+++L Y + + +VL PTRELA Q+ V + +G ++ + VGG ++R+ ++ L++ VV+ TPGR+ D +R S D +++ V+DEAD Sbjct: 209 DEKETKSAKSQVHTTFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEAD 379
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_ENCCU (ATP-dependent RNA helicase DHH1 OS=Encephalitozoon cuniculi GN=DHH1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 51/152 (33.55%), Postives = 91/152 (59.87%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 ++++GL LL+ I G++ PS +Q I G +++ ++++GTGKTA++ +L ++ + Q ++L P RELA QI + ++ + + GV VGGTS+++D + GVHV+VGTPGR+ D++ ++ + V DEAD+ Sbjct: 110 WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADK 261
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_AJECN (ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SUB2 PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18 Identity = 63/151 (41.72%), Postives = 83/151 (54.97%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAG---VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ LLR I GFE PS +QQ I +DV+ QA+SG GKTA F L QL+ +C LV+ TRELA QI+ YL VK GGT +++D +L + +VVGTPGR+ ++R + L IK FVLDE D+ Sbjct: 66 LKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIVVGTPGRLNALVRDKKLSLRNIKAFVLDECDK 216
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18 Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 3 Query: 234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 D+ SF +G+ ++L G++ P+ IQ+ I +G D+I A++G+GKTA F ILQ L LVLAPTRELA QI + ALG + VK VGG + L H++V TPGR+ D L SLR +K V+DEAD Sbjct: 56 DDAPKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGRLLDHLENTKGFSLRS--LKYLVMDEAD 213
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18 Identity = 61/155 (39.35%), Postives = 85/155 (54.84%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 +F +G+ ++L G+ P+ IQ+R I +G D+I A++G+GKTA F +LQ L Q +L+LAPTRELAQQI + ALG + V+ +GG + L HV+V TPGR+ D L SLR +K VLDEAD Sbjct: 29 TFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRLLDHLENTKGFSLRT--LKYLVLDEAD 181
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18 Identity = 62/155 (40.00%), Postives = 81/155 (52.26%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 SF +GL E L + G++ P+AIQ I +G D+I A++G+GKTA F ILQ L LVLAPTRELA QI + LG + V+ VGG + L H++V TPGR+ D L SLR +K V+DEAD Sbjct: 53 SFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLR--NLKYLVMDEAD 205 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |