CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 62/155 (40.00%), Postives = 82/155 (52.90%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            +F  +G+ E L       G++ P+ IQ+  I    KG D+I  A++G+GKTA F   ILQ L         LVLAPTRELA QI K   +LG  +GV+    VGG  +      L    H++V TPGR+ D L      SLR   +K  V+DEAD
Sbjct:   49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLENTKGFSLR--NLKYLVMDEAD 201          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = 3
Query:  261 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-DYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +G+   +++ + + G EK   IQ+  + P  +G D+I +A++GTGKT  F   I+ ++  Y     +      LVLAPTRELA+Q+EK  R     L      C+ GGT + +  R L  GV V VGTPGRV D+++R +L    ++  VLDEAD+
Sbjct:  109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDT---ICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQ 261          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 65/173 (37.57%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  225 TSYDEV---YDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----SGILQ----QLDYG--LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            TS D V    ++F  + L E L   I    + KP+ +Q+  I    +G D++  AQ+G+GKTA FC    SGI++    Q   G   V   A++L+PTRELA QI    +      GVKV    GGT + +  R L+ GV ++V TPGR+ D+L R  +    I+   LDEAD
Sbjct:  149 TSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEAD 321          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH21_ARATH (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 65/198 (32.83%), Postives = 96/198 (48.48%), Query Frame = 3
Query:  162 DARQYDTKMNELLSTDGQDFFTSYDEVYD---------SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ--------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            D    D ++ E+   D + F   ++  Y          S++   L   LL+ +   G++KPS IQ   I    +  DVI  A++G+GKTA F   +L  +       +        A+V+APTRELAQQIE+       YLG +V + VGG S+ E    +  G  +V+ TPGR+ D L R+    +     VLDEAD
Sbjct:  276 DRHWSDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 473          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_PICST (ATP-dependent RNA helicase DRS1 OS=Pichia stipitis GN=DRS1 PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 55/171 (32.16%), Postives = 98/171 (57.31%), Query Frame = 3
Query:  207 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            D ++  ++  +V+ +F  + L   +L+G+   G+ KPS IQ   I     G D++  A +G+GKTA +   I+++L Y    +   + +VL PTRELA Q+  V + +G ++  +     VGG ++R+ ++ L++   VV+ TPGR+ D +R   S   D +++ V+DEAD
Sbjct:  209 DEKETKSAKSQVHTTFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLYKPSKVASTRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEAD 379          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DHH1_ENCCU (ATP-dependent RNA helicase DHH1 OS=Encephalitozoon cuniculi GN=DHH1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 51/152 (33.55%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            ++++GL   LL+ I   G++ PS +Q   I     G +++ ++++GTGKTA++   +L  ++   +  Q ++L P RELA QI + ++ + +  GV     VGGTS+++D   +  GVHV+VGTPGR+ D++ ++        + V DEAD+
Sbjct:  110 WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADK 261          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_AJECN (ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SUB2 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 63/151 (41.72%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAG---VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I      +DV+ QA+SG GKTA F    L QL+    +C  LV+  TRELA QI+        YL  VK     GGT +++D  +L +      +VVGTPGR+  ++R + L    IK FVLDE D+
Sbjct:   66 LKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIVVGTPGRLNALVRDKKLSLRNIKAFVLDECDK 216          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 3
Query:  234 DEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            D+   SF  +G+ ++L       G++ P+ IQ+  I    +G D+I  A++G+GKTA F   ILQ L         LVLAPTRELA QI +   ALG  + VK    VGG  +      L    H++V TPGR+ D L      SLR   +K  V+DEAD
Sbjct:   56 DDAPKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGRLLDHLENTKGFSLRS--LKYLVMDEAD 213          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 61/155 (39.35%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            +F  +G+ ++L       G+  P+ IQ+R I    +G D+I  A++G+GKTA F   +LQ L     Q  +L+LAPTRELAQQI   + ALG  + V+    +GG  +      L    HV+V TPGR+ D L      SLR   +K  VLDEAD
Sbjct:   29 TFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRLLDHLENTKGFSLRT--LKYLVLDEAD 181          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 62/155 (40.00%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            SF  +GL E L     + G++ P+AIQ   I    +G D+I  A++G+GKTA F   ILQ L         LVLAPTRELA QI +    LG  + V+    VGG  +      L    H++V TPGR+ D L      SLR   +K  V+DEAD
Sbjct:   53 SFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLR--NLKYLVMDEAD 205          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_ASPNC1.119e-1840.00ATP-dependent rRNA helicase rrp3 OS=Aspergillus ni... [more]
RH53_ARATH1.119e-1837.82DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
RH37_ARATH1.119e-1837.57DEAD-box ATP-dependent RNA helicase 37 OS=Arabidop... [more]
RH21_ARATH1.119e-1832.83DEAD-box ATP-dependent RNA helicase 21 OS=Arabidop... [more]
DRS1_PICST1.119e-1832.16ATP-dependent RNA helicase DRS1 OS=Pichia stipitis... [more]
DHH1_ENCCU1.119e-1833.55ATP-dependent RNA helicase DHH1 OS=Encephalitozoon... [more]
SUB2_AJECN1.461e-1841.72ATP-dependent RNA helicase SUB2 OS=Ajellomyces cap... [more]
RRP3_BOTFB1.461e-1838.75ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]
RRP3_ASPTN1.461e-1839.35ATP-dependent rRNA helicase rrp3 OS=Aspergillus te... [more]
RRP3_ASPOR1.461e-1840.00ATP-dependent rRNA helicase rrp3 OS=Aspergillus or... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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