CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_ALISL (ATP-dependent RNA helicase rhlB OS=Aliivibrio salmonicida (strain LFI1238) GN=rhlB PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18 Identity = 54/158 (34.18%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F +GL+ +L G+ A GF + IQ + + G D+ QAQ+GTGKT F + L + Q +A+++APTRELA QI +L G+K GG + Q++++AGV +++GT GR+ D ++ + I++ VLDEAD Sbjct: 11 FADLGLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGGERYEKQQKVIEAGVDILIGTTGRIIDFYKQGQIDFKAIQVVVLDEAD 168
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_SCLS1 (ATP-dependent RNA helicase drs1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=drs1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18 Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = 3 Query: 237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 E+ +F +M L +LRG+ GF +P+ IQ + I G DV+ A +G+GKTA F +L++L Y + + +L PTRELA Q V L + +K VGG S++ + L+ V++ TPGR D +R S D +++ VLDEAD Sbjct: 265 ELNSTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLERLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEAD 424
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX54_HUMAN (ATP-dependent RNA helicase DDX54 OS=Homo sapiens GN=DDX54 PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18 Identity = 52/153 (33.99%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F +MGL + +GI G++ P+ IQ++ I G DV+ A++G+GKTA F + ++L Q +AL+L+PTRELA Q K + LG + G+K +GG + + L +++ TPGR+ + SL+ ++ V DEAD Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEAD 250
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 60/151 (39.74%), Postives = 81/151 (53.64%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 L+ LLR I GFE PS +QQ I G DV+ QA+SG GKTA F LQQLD + LV+ TRELA QI Y+ VK GG + +D L+ H+VV TPGR+ ++ +++R + +K FV+DE D+ Sbjct: 55 LKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDK 205
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 3 Query: 261 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL----DYGLVQC----QALVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707 +GL E L+ + G IQ+ ++P G D+I +A++GTGKT F +++QL D V+ + LVLAPTRELA+Q+EK ++ L CV GG S Q L GV VVVGTPGR+ D++ SL+ +K VLDEAD+ Sbjct: 109 LGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLST---VCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQ 263
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 63/161 (39.13%), Postives = 87/161 (54.04%), Query Frame = 3 Query: 240 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMF------VLDEAD 704 V +F +GL + L+ + G P+A+Q+R I +G DV+ A++G+GKTA F IL +L AL LAPTRELA Q+ + RALG LG++ A +GG + L HVVV TPGR+ ++ PD K+F VLDEAD Sbjct: 75 VPSTFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLINDD---PDLAKVFARTKFLVLDEAD 232
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 60/154 (38.96%), Postives = 83/154 (53.90%), Query Frame = 3 Query: 267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 L LLR + G+++PS IQ I + DVI A++G+GKTA F +L + + A+V+APTRELAQQIE+ YLG+KV + VGG S+ E ++ G VV+ TPGR+ D L R+ + VLDEAD Sbjct: 322 LGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEAD 475
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_PICGU (ATP-dependent RNA helicase DRS1 OS=Pichia guilliermondii GN=DRS1 PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 63/198 (31.82%), Postives = 106/198 (53.54%), Query Frame = 3 Query: 153 SQFDARQYDTKMNELLSTDGQDFFTSYDEVYD---------SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 ++ +A D + E+ D +D + E Y+ SF A+ L LL+G+ G+ PSAIQ I G D++ A +G+GKTA + I+++L Y + + +VL PTRELA Q+ V + LG ++ + VGG ++R+ ++ L++ +VV TPGR+ D +R S + +++ V+DEAD Sbjct: 159 NEHEAESEDEQEQEISEND-EDSAAAIAEFYEESKTTEKITSFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSRPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEAD 355
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_BOTFB (ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) GN=drs1 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = 3 Query: 237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704 E+ +F +M L +LRG+ GF +P+ IQ + I G DV+ A +G+GKTA F +L++L Y + + +L PTRELA Q V L + +K VGG S++ + L+ V++ TPGR D +R S D +++ VLDEAD Sbjct: 265 ELNTTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEAD 424
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX54_MOUSE (ATP-dependent RNA helicase DDX54 OS=Mus musculus GN=Ddx54 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 51/153 (33.33%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F +MGL + +GI G++ P+ IQ++ I G DV+ A++G+GKTA F + ++L Q +AL+L+PTRELA Q K + LG + G+K +GG + + L +++ TPGR+ + +L+ ++ V DEAD Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEAD 249 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |