CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_ALISL (ATP-dependent RNA helicase rhlB OS=Aliivibrio salmonicida (strain LFI1238) GN=rhlB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 54/158 (34.18%), Postives = 85/158 (53.80%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F  +GL+  +L G+ A GF   + IQ + +     G D+  QAQ+GTGKT  F +     L          + Q +A+++APTRELA QI     +L    G+K     GG    + Q++++AGV +++GT GR+ D  ++  +    I++ VLDEAD
Sbjct:   11 FADLGLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGGERYEKQQKVIEAGVDILIGTTGRIIDFYKQGQIDFKAIQVVVLDEAD 168          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_SCLS1 (ATP-dependent RNA helicase drs1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=drs1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            E+  +F +M L   +LRG+   GF +P+ IQ + I     G DV+  A +G+GKTA F   +L++L Y    +   +  +L PTRELA Q   V   L  +  +K    VGG S++  +  L+    V++ TPGR  D +R   S   D +++ VLDEAD
Sbjct:  265 ELNSTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLERLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEAD 424          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX54_HUMAN (ATP-dependent RNA helicase DDX54 OS=Homo sapiens GN=DDX54 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 52/153 (33.99%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F +MGL   + +GI   G++ P+ IQ++ I     G DV+  A++G+GKTA F   + ++L     Q   +AL+L+PTRELA Q  K  + LG + G+K    +GG  + +    L     +++ TPGR+  +    SL+   ++  V DEAD
Sbjct:   98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEAD 250          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 60/151 (39.74%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            L+  LLR I   GFE PS +QQ  I     G DV+ QA+SG GKTA F    LQQLD    +   LV+  TRELA QI         Y+  VK     GG  + +D   L+      H+VV TPGR+  ++  +++R + +K FV+DE D+
Sbjct:   55 LKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDK 205          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 63/158 (39.87%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  261 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL----DYGLVQC----QALVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 707
            +GL E L+  +   G      IQ+  ++P   G D+I +A++GTGKT  F   +++QL    D   V+     + LVLAPTRELA+Q+EK ++     L      CV GG S    Q  L  GV VVVGTPGR+ D++   SL+   +K  VLDEAD+
Sbjct:  109 LGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLST---VCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQ 263          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 63/161 (39.13%), Postives = 87/161 (54.04%), Query Frame = 3
Query:  240 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMF------VLDEAD 704
            V  +F  +GL + L+    + G   P+A+Q+R I    +G DV+  A++G+GKTA F   IL +L        AL LAPTRELA Q+ +  RALG  LG++  A +GG       + L    HVVV TPGR+  ++      PD  K+F      VLDEAD
Sbjct:   75 VPSTFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLINDD---PDLAKVFARTKFLVLDEAD 232          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 60/154 (38.96%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  267 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            L   LLR +   G+++PS IQ   I    +  DVI  A++G+GKTA F   +L  +        +       A+V+APTRELAQQIE+       YLG+KV + VGG S+ E    ++ G  VV+ TPGR+ D L R+    +     VLDEAD
Sbjct:  322 LGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEAD 475          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_PICGU (ATP-dependent RNA helicase DRS1 OS=Pichia guilliermondii GN=DRS1 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 63/198 (31.82%), Postives = 106/198 (53.54%), Query Frame = 3
Query:  153 SQFDARQYDTKMNELLSTDGQDFFTSYDEVYD---------SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            ++ +A   D +  E+   D +D   +  E Y+         SF A+ L   LL+G+   G+  PSAIQ   I     G D++  A +G+GKTA +   I+++L Y    +   + +VL PTRELA Q+  V + LG ++  +     VGG ++R+ ++ L++   +VV TPGR+ D +R   S   + +++ V+DEAD
Sbjct:  159 NEHEAESEDEQEQEISEND-EDSAAAIAEFYEESKTTEKITSFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQEQQLKSRPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEAD 355          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DRS1_BOTFB (ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) GN=drs1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEAD 704
            E+  +F +M L   +LRG+   GF +P+ IQ + I     G DV+  A +G+GKTA F   +L++L Y    +   +  +L PTRELA Q   V   L  +  +K    VGG S++  +  L+    V++ TPGR  D +R   S   D +++ VLDEAD
Sbjct:  265 ELNTTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLYRPKKVPTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEAD 424          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX54_MOUSE (ATP-dependent RNA helicase DDX54 OS=Mus musculus GN=Ddx54 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 51/153 (33.33%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F +MGL   + +GI   G++ P+ IQ++ I     G DV+  A++G+GKTA F   + ++L     Q   +AL+L+PTRELA Q  K  + LG + G+K    +GG  + +    L     +++ TPGR+  +    +L+   ++  V DEAD
Sbjct:   97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEAD 249          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_ALISL1.461e-1834.18ATP-dependent RNA helicase rhlB OS=Aliivibrio salm... [more]
DRS1_SCLS11.461e-1835.63ATP-dependent RNA helicase drs1 OS=Sclerotinia scl... [more]
DDX54_HUMAN1.461e-1833.99ATP-dependent RNA helicase DDX54 OS=Homo sapiens G... [more]
SUB2_PICGU1.909e-1839.74ATP-dependent RNA helicase SUB2 OS=Pichia guillier... [more]
RH3_ORYSJ1.909e-1839.87DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
RH36_ORYSJ1.909e-1839.13DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]
RH21_ORYSJ1.909e-1838.96DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sa... [more]
DRS1_PICGU1.909e-1831.82ATP-dependent RNA helicase DRS1 OS=Pichia guillier... [more]
DRS1_BOTFB1.909e-1835.63ATP-dependent RNA helicase drs1 OS=Botryotinia fuc... [more]
DDX54_MOUSE1.909e-1833.33ATP-dependent RNA helicase DDX54 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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