CN189435

Overview
NameCN189435
Unique NameCN189435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP4_ASPCL (ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus GN=dbp4 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 62/162 (38.27%), Postives = 93/162 (57.41%), Query Frame = 3
Query:  237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY-IKMFVLDEAD 704
            E ++SF  + L E  L G+ +  F+  + IQ R I    KG DV+  A++G+GKT  F   +L+ L Y     +     AL+L+PTRELA QI +V+R +G Y        +GG S+RE+Q  L   ++++V TPGR+   L + +L   Y ++M VLDEAD
Sbjct:   46 ESFESFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENL-YRRQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLREEQERL-GRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEAD 205          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_ASHGO (ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii GN=DBP2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 60/157 (38.22%), Postives = 82/157 (52.23%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            +FD  G  E +L+ +   GFEKP+AIQ +G      G D+I  A +G+GKT ++C  GI+      L+        LVLAPTRELA QI+K     G    ++     GG    +  R LQ GV +++ TPGR+ DML         +   VLDEAD
Sbjct:  115 TFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEAD 271          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_ASPCL (ATP-dependent RNA helicase dbp10 OS=Aspergillus clavatus GN=dbp10 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F AMGL  NLL+ I   GF  P+ IQ++ I       DV+  A++G+GKTA F   ++++L      V  + L+L+P+RELA Q  KV++ LG    +K    VGG S+ E   ++     +V+ TPGR   +    +L    I+  V DEAD
Sbjct:   91 FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEKLRSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKCVLLVGGDSLEEQFTMMAGNPDIVIATPGRFLHLKVEMNLDLYSIRYVVFDEAD 243          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 59/155 (38.06%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            SF  +G+ + L       G++ P+ IQ   I    +G D+I  A++G+GKTA F   ILQ L         L+LAPTRELA QI K   +LG  + V+    VGG  +      L    H++V TPGR+ D L      SLR   +K  V+DEAD
Sbjct:   53 SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRT--LKYLVMDEAD 205          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH29_ARATH (Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana GN=RH29 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 51/154 (33.12%), Postives = 88/154 (57.14%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704
            F+++ L  N+   I   G++ P+ IQ++ +     G+DV+  A++G+GKTA F   +L++L   + Q   +AL+L+PTR+LA+Q  K  + LG +  ++V   VGG S+ +    L  G  V++ TPGR+  +L     +    ++  V DEAD
Sbjct:   30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEAD 183          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX31_DICDI (Probable ATP-dependent RNA helicase ddx31 OS=Dictyostelium discoideum GN=ddx31 PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 57/180 (31.67%), Postives = 100/180 (55.56%), Query Frame = 3
Query:  195 LLSTDGQDFFTSYDEVYDSFD--AMGLQENLLRGIYAY-GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ----CQALVLAPTRELAQQI-EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADE 707
            +L T   +      E + S +  ++ L E L+R +  +   EKP+ IQ+  I P  KG D + +AQ+G+GKT ++   ++Q+L    V     C  +++ PTREL+ QI E++ + L  +  +     +GG +   ++  ++ G++++V TPGR+ D L+  QS   D IK  +LDEAD+
Sbjct:  188 ILETIESNIKVEKSETFSSMNWGSLQLSETLVRNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDGCYCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADK 367          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 57/156 (36.54%), Postives = 91/156 (58.33%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSLRPDYIKMFVLDEAD 704
            +F+ + L+E LL+GIYA GF +PS IQ+  +         ++I Q+QSGTGKTA F   +L +++   +  Q L LAPT ELA Q  +V+  +G + + V+V   + G  +     + +    +++GTPG V D   +R+ +    I++FVLDEAD
Sbjct:   99 TFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIPRGTEVTK---QIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEAD 251          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 3
Query:  249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSLRPDYIKMFVLDEAD 704
            +F+ + L+E LL+GIYA GF +PS IQ+  +         ++I Q+QSGTGKTA F   +L +++   +  Q L LAPT ELA Q  +V+  +G + + V+V   + G  +     + +    +V+GTPG V D   +R+ +    I++FVLDEAD
Sbjct:   98 TFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQCLCLAPTYELALQTGRVVERMGKFCVDVQVMYAIRGNRIPRGTDVTK---QIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEAD 250          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 61/154 (39.61%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704
            F  +G+   ++      GF+ P+ IQ + I    +  DVI  AQ+G+GKTA F   ILQ L        A VLAPTRELA QI + + ALG  +GV+    VGG  +      L    HV+V TPGR+ D L      SLR   ++  V+DEAD
Sbjct:  106 FSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLENTKGFSLRG--LQYLVMDEAD 257          
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PSEPK (ATP-dependent RNA helicase rhlB OS=Pseudomonas putida (strain KT2440) GN=rhlB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704
            F    L   L+  I+  GF   + IQ + +    +G D I +AQ+GTGKTA F   I+ QL       +  + + +AL++APTREL  QI K   AL  Y G+ V + VGG    +  + L+A    ++V TPGR+ D  +R  +  D +++ VLDEAD
Sbjct:   11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD 169          
The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP4_ASPCL9.472e-1838.27ATP-dependent RNA helicase dbp4 OS=Aspergillus cla... [more]
DBP2_ASHGO9.472e-1838.22ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii... [more]
DBP10_ASPCL9.472e-1836.60ATP-dependent RNA helicase dbp10 OS=Aspergillus cl... [more]
RRP3_NEOFI1.237e-1738.06ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
RH29_ARATH1.237e-1733.12Putative DEAD-box ATP-dependent RNA helicase 29 OS... [more]
DDX31_DICDI1.237e-1731.67Probable ATP-dependent RNA helicase ddx31 OS=Dicty... [more]
DDX25_MOUSE1.237e-1736.54ATP-dependent RNA helicase DDX25 OS=Mus musculus G... [more]
DDX25_BOVIN1.237e-1737.18ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=... [more]
RRP3_USTMA1.616e-1739.61ATP-dependent rRNA helicase RRP3 OS=Ustilago maydi... [more]
RHLB_PSEPK1.616e-1736.48ATP-dependent RNA helicase rhlB OS=Pseudomonas put... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bp
GCAGGCGAGGAGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATC
TTCTCCTTCTCTTTGAAAAAAAAAAGAAAACCAACTCTTTCTCTCCATTT
TAATCACCATCATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAG
GATCTCAATTTGATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTC
TCTACTGATGGGCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAG
TTTTGATGCAATGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCTT
ATGGGTTTGAGAAGCCTTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTC
TGCAAGGGACTTGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAAC
AGCAACTTTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCC
AATGTCAGGCCCTGGTGTTGGCACCCACTAGGGAACTAGCTCAACAAATT
GAGAAAGTAATGAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGC
TTGTGTCGGTGGGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTG
GTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGC
CGACAGTCTTTACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGC
TGATGAAAT
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