CN189435
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP4_ASPCL (ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus GN=dbp4 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18 Identity = 62/162 (38.27%), Postives = 93/162 (57.41%), Query Frame = 3 Query: 237 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY-IKMFVLDEAD 704 E ++SF + L E L G+ + F+ + IQ R I KG DV+ A++G+GKT F +L+ L Y + AL+L+PTRELA QI +V+R +G Y +GG S+RE+Q L ++++V TPGR+ L + +L Y ++M VLDEAD Sbjct: 46 ESFESFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENL-YRRQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLREEQERL-GRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEAD 205
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP2_ASHGO (ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii GN=DBP2 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18 Identity = 60/157 (38.22%), Postives = 82/157 (52.23%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 +FD G E +L+ + GFEKP+AIQ +G G D+I A +G+GKT ++C GI+ L+ LVLAPTRELA QI+K G ++ GG + R LQ GV +++ TPGR+ DML + VLDEAD Sbjct: 115 TFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEAD 271
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DBP10_ASPCL (ATP-dependent RNA helicase dbp10 OS=Aspergillus clavatus GN=dbp10 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18 Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F AMGL NLL+ I GF P+ IQ++ I DV+ A++G+GKTA F ++++L V + L+L+P+RELA Q KV++ LG +K VGG S+ E ++ +V+ TPGR + +L I+ V DEAD Sbjct: 91 FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEKLRSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKCVLLVGGDSLEEQFTMMAGNPDIVIATPGRFLHLKVEMNLDLYSIRYVVFDEAD 243
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 59/155 (38.06%), Postives = 80/155 (51.61%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 SF +G+ + L G++ P+ IQ I +G D+I A++G+GKTA F ILQ L L+LAPTRELA QI K +LG + V+ VGG + L H++V TPGR+ D L SLR +K V+DEAD Sbjct: 53 SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRT--LKYLVMDEAD 205
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RH29_ARATH (Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana GN=RH29 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 51/154 (33.12%), Postives = 88/154 (57.14%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEAD 704 F+++ L N+ I G++ P+ IQ++ + G+DV+ A++G+GKTA F +L++L + Q +AL+L+PTR+LA+Q K + LG + ++V VGG S+ + L G V++ TPGR+ +L + ++ V DEAD Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEAD 183
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX31_DICDI (Probable ATP-dependent RNA helicase ddx31 OS=Dictyostelium discoideum GN=ddx31 PE=3 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 57/180 (31.67%), Postives = 100/180 (55.56%), Query Frame = 3 Query: 195 LLSTDGQDFFTSYDEVYDSFD--AMGLQENLLRGIYAY-GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQ----CQALVLAPTRELAQQI-EKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADE 707 +L T + E + S + ++ L E L+R + + EKP+ IQ+ I P KG D + +AQ+G+GKT ++ ++Q+L V C +++ PTREL+ QI E++ + L + + +GG + ++ ++ G++++V TPGR+ D L+ QS D IK +LDEAD+ Sbjct: 188 ILETIESNIKVEKSETFSSMNWGSLQLSETLVRNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDGCYCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADK 367
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 57/156 (36.54%), Postives = 91/156 (58.33%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSLRPDYIKMFVLDEAD 704 +F+ + L+E LL+GIYA GF +PS IQ+ + ++I Q+QSGTGKTA F +L +++ + Q L LAPT ELA Q +V+ +G + + V+V + G + + + +++GTPG V D +R+ + I++FVLDEAD Sbjct: 99 TFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIPRGTEVTK---QIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEAD 251
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 3 Query: 249 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSLRPDYIKMFVLDEAD 704 +F+ + L+E LL+GIYA GF +PS IQ+ + ++I Q+QSGTGKTA F +L +++ + Q L LAPT ELA Q +V+ +G + + V+V + G + + + +V+GTPG V D +R+ + I++FVLDEAD Sbjct: 98 TFEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQCLCLAPTYELALQTGRVVERMGKFCVDVQVMYAIRGNRIPRGTDVTK---QIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEAD 250
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 61/154 (39.61%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEAD 704 F +G+ ++ GF+ P+ IQ + I + DVI AQ+G+GKTA F ILQ L A VLAPTRELA QI + + ALG +GV+ VGG + L HV+V TPGR+ D L SLR ++ V+DEAD Sbjct: 106 FSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLENTKGFSLRG--LQYLVMDEAD 257
BLAST of CN189435 vs. ExPASy Swiss-Prot
Match: RHLB_PSEPK (ATP-dependent RNA helicase rhlB OS=Pseudomonas putida (strain KT2440) GN=rhlB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 3 Query: 252 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 704 F L L+ I+ GF + IQ + + +G D I +AQ+GTGKTA F I+ QL + + + +AL++APTREL QI K AL Y G+ V + VGG + + L+A ++V TPGR+ D +R + D +++ VLDEAD Sbjct: 11 FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD 169 The following BLAST results are available for this feature:
BLAST of CN189435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189435 ID=CN189435; Name=CN189435; organism=Citrus sinensis; type=EST; length=709bpback to top |