CN189406

Overview
NameCN189406
Unique NameCN189406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 56/166 (33.73%), Postives = 88/166 (53.01%), Query Frame = 2
Query:    5 VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 502
            VG GRIG+L+  R+  F  +++ +D   + P    + G +     D +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA  SGH+     DV+  +P   D P   +    +TPH+  +T +AQ R    V + +     GE  P
Sbjct:  147 VGLGRIGQLVAARIAAFGAHVIAYDPY-VAPARAAQLGIELMS-FDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEVALADAVRSGHVRAAGLDVFATEPC-TDSPLFELSQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 309          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: YGDH_SCHPO (Putative 2-hydroxyacid dehydrogenase C1773.17c OS=Schizosaccharomyces pombe GN=SPBC1773.17c PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 2
Query:    5 VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 412
            +G G IGK   Q++ P  C ++YH+R +++ + EK  GA F    D +L   D++ +N PLT  T  +       KMK GV I+N ARGAI++  A + A  SG +A    DV+  +P P    W       + PH
Sbjct:  165 IGMGAIGKSFAQKILPLGCEIVYHNRNRLEAEEEKRLGASFVS-FDELLSSSDVISINCPLTPATHDLISTKEFEKMKDGVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFLNEPTPNKF-WLECDKVTIQPH 298          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: GHRB_ENTS8 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ghrB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 58/164 (35.37%), Postives = 83/164 (50.61%), Query Frame = 2
Query:    5 VGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 493
            VG GRIG  L QR    FN  +LY+ R +   + E+   A++  DLDT+L + D V V  PLT++T  M   ++  KMKK  + +N  RG ++D  A++ A  SG I     DV+  +P  KD P   M N    PH+   T + +   AA   D L     G+
Sbjct:  151 VGMGRIGLALAQRAHFGFNMPILYNAR-RHHSEAEERFNARYC-DLDTLLAESDFVCVILPLTDETHHMIGAEQFRKMKKSAIFINAGRGPVVDENALIAALQSGEIHAAGLDVFEQEPLSKDSPLLTMKNVVALPHIGSATHETRYNMAACAVDNLINALNGD 312          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: YN14_YEAST (Putative 2-hydroxyacid dehydrogenase YNL274C OS=Saccharomyces cerevisiae GN=YNL274C PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 2
Query:    5 VGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 358
            +G GRIG+ +L+RLKPF   N +YH+R ++    E+E G ++    +  L + DIV VN PL   T  + + + I KMK GV+IVN ARGA++D QA+ DA  SG I     DV+  +P
Sbjct:  169 LGLGRIGRCILERLKPFGFENFIYHNRHQLPS--EEEHGCEYV-GFEEFLKRSDIVSVNVPLNHNTHHLINAETIEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEP 284          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: YEAA_SCHPO (Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Schizosaccharomyces pombe GN=SPACUNK4.10 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 2
Query:    5 VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ--AMTPHVSGTTIDAQLRYAAGV 460
            +G G IGK + +R + F+  ++YH+R  + P+ E E GA+F    D +L K D++ +N PL   TR +  K    KMK+G++IVN ARGA+MD  A+V+A   G +     DV+  +  PK HP   + N+   + PH+   +++ Q +    V
Sbjct:  162 LGLGGIGKTMAKRARAFDMKIVYHNRTPL-PEEEAE-GAEFVS-FDDLLAKSDVLSLNLPLNAHTRHIIGKPEFQKMKRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFEEE--PKIHP-GLLENEKVILLPHLGTNSLETQYKMECAV 309          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 58/175 (33.14%), Postives = 94/175 (53.71%), Query Frame = 2
Query:    5 VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP--VQNYIVK 523
            +G GRIG+ + +R K F   +LY+ R +  P+ E+E  A+F+  L+ +L + D VV+  PLT++T  M  +  +  MK   ++VN ARG ++DT+A++ A   G IAG   DV+  +P   +  +  + N  + PH+   T  A+   A  V   L  +  GE  P  V   +VK
Sbjct:  156 IGFGRIGQAVARRAKGFGMRILYYSRTRK-PEAEEELKAEFKP-LEELLKESDFVVLAVPLTKETYHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELFS-LKNVILAPHIGSATFGAREGMAELVARNLIAFKNGEVPPTLVNKEVVK 327          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: GHRB_PECCP (Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 54/164 (32.93%), Postives = 86/164 (52.44%), Query Frame = 2
Query:    5 VGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 493
            +G GRIG  + QR    F+  +LY+ R +   + E+   A+   DLDT+L + D + +  PLT +T  +  ++++AKMK   +++N  RGA++D  A+ +A   G I G   DV+  +P P D P   +PN    PH+   T + +   AA   D L     GE
Sbjct:  147 LGMGRIGLAVAQRAHFGFSMPVLYNAR-RHHAEAEQRFNAR-HCDLDTLLAESDFLCITLPLTTETHHLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQGAGLDVFVKEPLPVDSPLLDLPNVVALPHIGSATHETRYDMAACAVDNLIAALSGE 308          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: GHRB_SHIFL (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri GN=ghrB PE=3 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 55/164 (33.54%), Postives = 84/164 (51.22%), Query Frame = 2
Query:    5 VGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 493
            VG GRIG  L QR+   FN  +LY+ R +   + E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  151 VGMGRIGMALAQRVHFGFNMPILYNAR-RHHKEAEERFNARYC-DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: GHRB_ENT38 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sp. (strain 638) GN=ghrB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 55/163 (33.74%), Postives = 82/163 (50.31%), Query Frame = 2
Query:    5 VGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 490
            VG GRIG  L QR    FN  +LY+ R +   + E+   A++ E L+T+L + D V +  PLT++T  +  K    KMKK  + +N  RG ++D +A+++A   G I     DV+  +P P D P   M N    PH+   T + +   AA   D L     G
Sbjct:  151 VGMGRIGLALAQRAHFGFNMPILYNAR-RHHSEAEERFEARYCE-LETLLQEADYVCLILPLTDETHHLIGKAEFEKMKKSAIFINAGRGPVVDEKALIEALQKGEIHAAGLDVFEQEPLPVDSPLLTMSNVVSLPHIGSATHETRYNMAATAVDNLINALNG 311          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: GHRB_ECOSM (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 55/164 (33.54%), Postives = 84/164 (51.22%), Query Frame = 2
Query:    5 VGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 493
            VG GRIG  L QR +  FN  +LY+ R +   + E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++D  A++ A   G I     DV+  +P   D P   M N    PH+   T + +   AA   D L    +G+
Sbjct:  151 VGMGRIGMALAQRAQFGFNMPILYNAR-RHHKEAEERFNARYC-DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGK 312          
The following BLAST results are available for this feature:
BLAST of CN189406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
SERA_MYCLE6.183e-1933.73D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
YGDH_SCHPO1.378e-1835.29Putative 2-hydroxyacid dehydrogenase C1773.17c OS=... [more]
GHRB_ENTS82.350e-1835.37Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
YN14_YEAST1.166e-1742.86Putative 2-hydroxyacid dehydrogenase YNL274C OS=Sa... [more]
YEAA_SCHPO2.598e-1735.06Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Sc... [more]
GYAR_THEGJ3.393e-1733.14Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GHRB_PECCP3.393e-1732.93Glyoxylate/hydroxypyruvate reductase B OS=Pectobac... [more]
GHRB_SHIFL4.431e-1733.54Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_ENT384.431e-1733.74Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_ECOSM4.431e-1733.54Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189406 ID=CN189406; Name=CN189406; organism=Citrus sinensis; type=EST; length=686bp
GACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCCAACGACTTAAAC
CTTTCAATTGTAATCTCCTTTATCATGACCGGGTGAAGATGGATCCTCAA
TTGGAGAAAGAGACTGGAGCAAAATTTGAGGAGGATCTAGATACTATGCT
TCCCAAATGTGACATAGTTGTTGTCAACACCCCTCTAACAGAAAAGACGA
GAGGGATGTTTGACAAAGATAGGATTGCAAAGATGAAGAAGGGCGTCTTG
ATTGTCAACAATGCTCGAGGAGCAATCATGGACACACAAGCTGTTGTTGA
CGCTTGCTCTAGTGGACACATTGCAGGTTATAGTGGTGATGTTTGGAATC
CACAACCAGCTCCAAAGGACCATCCCTGGCGTTACATGCCAAATCAGGCA
ATGACCCCTCATGTTTCTGGGACCACTATTGATGCACAGCTACGCTATGC
TGCGGGAGTCAAGGATATGCTTGACAGATACTTCAAGGGAGAAGATTTTC
CTGTTCAAAATTACATAGTGAAGGCGGGGGAGCTGGCACCTCAATATCGA
TAATTTCACGTGTGAAGAGACTGATCGTTTGAGTTTATTCTCTGTTGAAC
AGGACCTTCTGGAATAATGTTCCTATGTTTGTACCTTCTGGCTTCTGGAA
TAATGTTCCTATGTTTGTAAGCTCTACATTTAACAA
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