DR908694

Overview
NameDR908694
Unique NameDR908694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.954e-25
Identity = 56/136 (41.18%), Postives = 83/136 (61.03%), Query Frame = 3
Query:    6 DLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS--------DKAKYESTAR 389
            +L   P    SA P  +++F+W  TI G  D+ Y    F +++ FP DYP+KPP V F T+ FHPN+++NG+ICLDILK++WSP   +  +L+SI SLL +PN + PL    A ++ +        DK   E+T+R
Sbjct:   17 NLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRYQEATSR 152          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.954e-25
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 3
Query:   75 ATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 410
            A I GP D+ YA G+F + I  P  YPF+PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK ++  ++  AR  T+KYA
Sbjct:   49 AQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.954e-25
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 3
Query:   45 PVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS-DKAKYESTARSWTQKYAMG 416
            PV + DMFHW+A I GP+++PY GG +++ IH    YP  PP V F+TK+ HPNI+ +NG +C+DILK  WSPA ++    L+I SLL++ +   PL  + A + ++ DK  Y S  R  T  YA G
Sbjct:   28 PVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.334e-25
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 3
Query:   81 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 416
            I GP D+PY GG F++ I  P  YPF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT  YA G
Sbjct:   43 IAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.427e-25
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 3
Query:    9 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLG 431
            L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y S AR  T+ +A G  L G
Sbjct:   23 LTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAQGSSLRG 163          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.427e-25
Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = 3
Query:   57 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 407
            ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:   31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.427e-25
Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = 3
Query:   57 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 407
            ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:   31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.427e-25
Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = 3
Query:   57 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 407
            ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:   31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.427e-25
Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = 3
Query:   57 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 407
            ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:   31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.161e-24
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 3
Query:    3 KDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS-DKAKYESTARSWTQKYAM 413
            K++Q++         + +D  +F W A I GPS++PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ +S D   + S A+ +T+  AM
Sbjct:   13 KEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAM 153          
The following BLAST results are available for this feature:
BLAST of DR908694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
UBE2C_DICDI1.954e-2541.18Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC37_ARATH1.954e-2548.28Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC16_SCHPO1.954e-2544.88Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBCD4_DROME3.334e-2548.67Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBE2S_XENTR7.427e-2541.13Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UB2L3_PONAB7.427e-2540.68Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE7.427e-2540.68Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN7.427e-2540.68Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN7.427e-2540.68Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBC21_ARATH2.161e-2440.43Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16822 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-45_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908694 ID=DR908694; Name=DR908694; organism=Citrus sinensis; type=EST; length=593bp
TCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTGTG
GCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGATAG
CCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGATT
ATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCG
AACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGTG
GAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTTGC
TTACTGATCCAAATCCTGACGACCCTCTTGTACCGGAGATTGCCCACATG
TACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGACACA
GAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAAAAAGGAACA
CATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTCTTTAACTTG
CTTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGGGAGTTGCAA
GGGCGGGACGTTTTTATGTTAATGTTGAATGTTTGTGTTTGAA
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