DR908694

Overview
NameDR908694
Unique NameDR908694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.951e-23
Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 3
Query:   57 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 377
            ++ HW  TI GPSD+ Y G  F +++ FP +YP+ PP + F + ++HPN++ +G+ICLDILK++WS    +  +LLS+ SLL +PN   PL  + A ++  D  +Y+
Sbjct:   57 NLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23
Identity = 49/114 (42.98%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   36 SAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 377
            +A P  +++F W AT+ GP D+ Y    + +T+ FP DYP+KPP V F T  +HPN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL  + A M+ S++ +Y+
Sbjct:   51 TAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYK 163          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23
Identity = 50/148 (33.78%), Postives = 80/148 (54.05%), Query Frame = 3
Query:    3 KDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 404
            K+L ++ P   +AGP  ED  F W   I GP  +P+ GG++  T+ FP DYP  PP + F  + FHPN+  +G++C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     +   M++ D+ +Y    R   +K
Sbjct:   15 KELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.549e-22
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 3
Query:   33 CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 410
            C +     D+ +W+  I G   + + GG++ +T+ FP +YP +PPK  F   +FHPN+  +G++CL IL E+  W PA+TI ++LL I  LL DPN   P   E   M+K DK +YE   R+  ++ A
Sbjct:   29 CKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 156          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.023e-22
Identity = 50/138 (36.23%), Postives = 83/138 (60.14%), Query Frame = 3
Query:    6 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 377
            D+++ P    SAG V + D++ W+  ++GP D+ Y GG F   + FP DYP KPPK+ F ++++HPNI+  G++C+ IL             +E+W P  T+  +LLS+ S+LTDPN + P   + A M + + A+++
Sbjct:   14 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFK 151          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.642e-22
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 3
Query:   36 SAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 407
            SA P  E++F W  TI GP ++ Y+G  + +++ FP  YP+  P V F T  FHPN++  G+ICLDILK++WS    +  +LLSI SLL +PN + PL  + A M+ +D+ +Y+    ++ +K+
Sbjct:   53 SAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMW-NDQKEYKKYLDAFYEKH 175          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.642e-22
Identity = 52/138 (37.68%), Postives = 80/138 (57.97%), Query Frame = 3
Query:    3 KDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 374
            KDL K P    SAG V E ++F W  +IMGP D+ Y GG F   + FP +YP  PP V F ++++HPN+ S+G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++ ++A++
Sbjct:   15 KDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEF 152          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.506e-22
Identity = 52/134 (38.81%), Postives = 74/134 (55.22%), Query Frame = 3
Query:    9 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 410
            L  DPP         ED+   QA+I GP+ +PY GG+F + +    D+P  PPK  F TK+FHPN+  NG IC++ LK+ W P L I +VLL++  LL  PNP+  L  E   +       Y   A+ +T+ +A
Sbjct:   26 LTNDPPEGIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTEIHA 159          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.506e-22
Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = 3
Query:   36 SAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 365
            SA P  +++F W+ TI G  D+ + G  + +++ F  DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++ + +
Sbjct:   56 SAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQE 165          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.686e-22
Identity = 54/136 (39.71%), Postives = 73/136 (53.68%), Query Frame = 3
Query:    3 KDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 410
            +D++  PP          D+   QA I GP+ +PYA G+F V +    D+P  PPK  F TK+FHPN+ SNG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   24 QDMESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
The following BLAST results are available for this feature:
BLAST of DR908694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
UBC11_SCHPO6.951e-2341.12Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBE2C_SPISO9.079e-2342.98Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC7_SCHPO9.079e-2333.78Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC9_SCHPO1.549e-2238.28SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC7_CAEEL2.023e-2236.23Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBE2C_DROME2.642e-2240.32Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC14_ARATH2.642e-2237.68Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBE2S_NEMVE4.506e-2238.81Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBC20_ARATH4.506e-2243.64Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBE2S_DROGR7.686e-2239.71Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16822 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-45_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908694 ID=DR908694; Name=DR908694; organism=Citrus sinensis; type=EST; length=593bp
TCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTGTG
GCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGATAG
CCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGATT
ATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCG
AACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGTG
GAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTTGC
TTACTGATCCAAATCCTGACGACCCTCTTGTACCGGAGATTGCCCACATG
TACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGACACA
GAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAAAAAGGAACA
CATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTCTTTAACTTG
CTTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGGGAGTTGCAA
GGGCGGGACGTTTTTATGTTAATGTTGAATGTTTGTGTTTGAA
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