DR908694

Overview
NameDR908694
Unique NameDR908694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.889e-28
Identity = 55/129 (42.64%), Postives = 82/129 (63.57%), Query Frame = 3
Query:    3 KDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR 389
            K +Q+DPP   SA PV++++  W A I+GP+D+P+  G F + + F   YP KPP V F + +FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E A +++ +K +Y    R
Sbjct:   14 KRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVR 142          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.222e-28
Identity = 55/136 (40.44%), Postives = 86/136 (63.24%), Query Frame = 3
Query:    3 KDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 395
            K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  K++Y     E+  +SW
Sbjct:   14 KRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27
Identity = 56/138 (40.58%), Postives = 86/138 (62.32%), Query Frame = 3
Query:    9 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 410
            L  +PP   +     + M   +A I+G +++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:   14 LAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.036e-26
Identity = 57/138 (41.30%), Postives = 87/138 (63.04%), Query Frame = 3
Query:    9 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 410
            L  +PP   +     + M   +A I+G +++PY  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:   14 LATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.036e-26
Identity = 58/122 (47.54%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   48 VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 410
            V E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   32 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.036e-26
Identity = 58/122 (47.54%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   48 VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 410
            V E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   32 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.036e-26
Identity = 58/122 (47.54%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   48 VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 410
            V E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   32 VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.938e-26
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = 3
Query:    9 LQKDPPTSCSAGPVAEDMFHWQATIMGPS-DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 413
            L  +P     A P   +  ++   I G S DSP+ GG F   +    +YP   PKV F TK++HPN++    I LDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++   +K+++A+   TAR+WT+ YAM
Sbjct:   15 LLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYAM 150          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.143e-26
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 3
Query:    3 KDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 377
            K L  D P   S  P  +++  W A I GP ++P+  G F +T+ F   YP KPP V F +K+FHPNI +NG +CLDIL+ +WSP   ++ +L S+ SLL DPNP  P   + A ++K +  +YE
Sbjct:   14 KRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYE 138          
BLAST of DR908694 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 55/135 (40.74%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   18 DPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 410
            +PP   +     + +   +A I+G +++PY  GVF + +  P  YPF+PP+V F T ++HPNI+S+G ICLDIL    K  W P+L I+ VL SI  L+ +PNPDDPL+ +I+  +K +K  +   A+ WT+ +A
Sbjct:   17 EPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151          
The following BLAST results are available for this feature:
BLAST of DR908694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
UBC2_SCHPO1.889e-2842.64Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_KLULA3.222e-2840.44Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBE2T_BOVIN6.076e-2740.58Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2T_HUMAN1.036e-2641.30Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBE2K_MOUSE1.036e-2647.54Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN1.036e-2647.54Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN1.036e-2647.54Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UE2NL_HUMAN3.938e-2644.12Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC2_CRYNE5.143e-2642.40Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBE2T_MOUSE1.146e-2540.74Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16822 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-45_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908694 ID=DR908694; Name=DR908694; organism=Citrus sinensis; type=EST; length=593bp
TCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCTGTG
GCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGATAG
CCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGATT
ATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCG
AACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGTG
GAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTTGC
TTACTGATCCAAATCCTGACGACCCTCTTGTACCGGAGATTGCCCACATG
TACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGACACA
GAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAAAAAGGAACA
CATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTCTTTAACTTG
CTTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGGGAGTTGCAA
GGGCGGGACGTTTTTATGTTAATGTTGAATGTTTGTGTTTGAA
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