DR908686

Overview
NameDR908686
Unique NameDR908686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908686 vs. ExPASy Swiss-Prot
Match: UFM1_HUMAN (Ubiquitin-fold modifier 1 OS=Homo sapiens GN=UFM1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.330e-34
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = 2
Query:   65 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 310
            KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGSELR+IPRDRVG+
Sbjct:    3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 84          
BLAST of DR908686 vs. ExPASy Swiss-Prot
Match: UFM1_CHICK (Ubiquitin-fold modifier 1 OS=Gallus gallus GN=UFM1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.043e-34
Identity = 69/83 (83.13%), Postives = 78/83 (93.98%), Query Frame = 2
Query:   65 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAS 313
            KV+FKVTLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGS+LR+IPRDRVG+S
Sbjct:    3 KVTFKVTLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSDLRIIPRDRVGSS 85          
BLAST of DR908686 vs. ExPASy Swiss-Prot
Match: UFM1_BOVIN (Ubiquitin-fold modifier 1 OS=Bos taurus GN=UFM1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.043e-34
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 2
Query:   65 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 307
            KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGSELR+IPRDRVG
Sbjct:    3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 83          
BLAST of DR908686 vs. ExPASy Swiss-Prot
Match: UFM1_DANRE (Ubiquitin-fold modifier 1 OS=Danio rerio GN=ufm1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.973e-33
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 2
Query:   65 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 307
            KV+FK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  T AIITNDG+GINP Q+AGNVFLKHGSELR+IPRDRVG
Sbjct:    3 KVTFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATGAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 83          
BLAST of DR908686 vs. ExPASy Swiss-Prot
Match: UFM1_XENLA (Ubiquitin-fold modifier 1 OS=Xenopus laevis GN=ufm1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.395e-33
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 2
Query:   65 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 310
            KV+FK+TLTSDP+LP+KV  VPE  PFTAVLKFAAEEFKVP  TSAIITNDG+G+NP Q+AGNVFLKHGSELRLIPRDRVG+
Sbjct:    3 KVTFKITLTSDPRLPYKVLCVPENTPFTAVLKFAAEEFKVPAATSAIITNDGIGLNPAQTAGNVFLKHGSELRLIPRDRVGS 84          
BLAST of DR908686 vs. ExPASy Swiss-Prot
Match: UFM1_DICDI (Ubiquitin-fold modifier 1 OS=Dictyostelium discoideum GN=ufm1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.757e-30
Identity = 61/81 (75.31%), Postives = 73/81 (90.12%), Query Frame = 2
Query:   65 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 307
            KV+FK+TLTSDPKLPF+V +V E  PFTAVL+FA E+F VP QTSAIITNDG+GINP Q++GN+FLK+GS+LRLIPRDRVG
Sbjct:    3 KVTFKITLTSDPKLPFRVINVTEDTPFTAVLRFACEQFNVPWQTSAIITNDGIGINPAQTSGNIFLKNGSDLRLIPRDRVG 83          
BLAST of DR908686 vs. ExPASy Swiss-Prot
Match: UFM1_THEPA (Probable ubiquitin-fold modifier 1 OS=Theileria parva GN=TP01_0287 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.256e-28
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 2
Query:   59 GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 307
            G KV+FK+ L SD   P+KV SVPE APF+AV+KFAAEEF++ P T AIITNDGVGINP Q+AG VFLK+GS LRLIPRDRVG
Sbjct:    7 GAKVTFKIVLASDANQPYKVLSVPEQAPFSAVIKFAAEEFRLNPATCAIITNDGVGINPTQTAGGVFLKYGSNLRLIPRDRVG 89          
The following BLAST results are available for this feature:
BLAST of DR908686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
UFM1_HUMAN2.330e-3484.15Ubiquitin-fold modifier 1 OS=Homo sapiens GN=UFM1 ... [more]
UFM1_CHICK3.043e-3483.13Ubiquitin-fold modifier 1 OS=Gallus gallus GN=UFM1... [more]
UFM1_BOVIN3.043e-3485.19Ubiquitin-fold modifier 1 OS=Bos taurus GN=UFM1 PE... [more]
UFM1_DANRE1.973e-3382.72Ubiquitin-fold modifier 1 OS=Danio rerio GN=ufm1 P... [more]
UFM1_XENLA4.395e-3381.71Ubiquitin-fold modifier 1 OS=Xenopus laevis GN=ufm... [more]
UFM1_DICDI7.757e-3075.31Ubiquitin-fold modifier 1 OS=Dictyostelium discoid... [more]
UFM1_THEPA4.256e-2872.29Probable ubiquitin-fold modifier 1 OS=Theileria pa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16814 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-49_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908686 ID=DR908686; Name=DR908686; organism=Citrus sinensis; type=EST; length=595bp
AAAAAAACCCTTGATTAATATCTGAAAAAGAAAATAGTAATTTAAAAAAA
TGGCGTCTGGTGGAAAGGTCTCCTTCAAGGTTACGCTCACCTCCGATCCT
AAGCTTCCCTTCAAAGTGTTTAGCGTTCCTGAAGCGGCTCCGTTTACCGC
CGTTTTGAAATTCGCAGCCGAGGAATTCAAAGTCCCTCCTCAAACTAGCG
CTATCATCACCAACGATGGTGTGGGAATCAATCCTCAGCAAAGTGCAGGC
AATGTCTTCCTCAAACATGGTTCCGAGCTTCGGTTGATTCCCCGTGACAG
GGTTGGTGCTTCAAGGATGGTGGGAGCTGCATCATTGTTGGAGTGAAGGG
ACTGGTTCACCTGGATTAATTTGAATCCATTGCTTTAGTTTTCATCATGT
TGGGGGCATAGTTAATTAGTTATATCTTATGCATCATACTTCTTGGGTAA
AGATTATCCTTGTGTTGTGAAAGGCAAAGTATTTGTAGTTTTGAAAGAAT
GGAAGAAACTATGAGGCATGAATATTTCTGTAATGACCACCATAATCATT
TCAATAAATAAATAATAGAATGACTCACAATGCCAAAAAAAAAAA
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