DR908680

Overview
NameDR908680
Unique NameDR908680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.039e-44
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2B_CHLSC (50S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.039e-44
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNCSATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.039e-44
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQK+LGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.039e-44
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1
Query:  109 STDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            STDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 STDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGV 222          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_PHAVU (50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.357e-44
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQK+LGRAGSKCWLGKRP+VRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.357e-44
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQK+LGRAGSKCWLGKRP+VRGV
Sbjct:  132 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGV 222          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.357e-44
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  134 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGSKCWLGKRPVVRGV 224          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.357e-44
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN G NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.773e-44
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSAT GQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  137 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATFGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 227          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.773e-44
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLI KNCSATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
The following BLAST results are available for this feature:
BLAST of DR908680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2B_LIRTU1.039e-4497.8050S ribosomal protein L2-B, chloroplastic OS=Lirio... [more]
RK2B_CHLSC1.039e-4497.8050S ribosomal protein L2-B, chloroplastic OS=Chlor... [more]
RK2A_SOYBN1.039e-4497.8050S ribosomal protein L2-A, chloroplastic OS=Glyci... [more]
RK2A_POPAL1.039e-4496.7450S ribosomal protein L2-A, chloroplastic OS=Popul... [more]
RK2_PHAVU1.357e-4496.7050S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_PHAAN1.357e-4496.7050S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_MANES1.357e-4497.8050S ribosomal protein L2, chloroplastic OS=Manihot... [more]
RK2_CUCSA1.357e-4497.8050S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RK2_PLAOC1.773e-4497.8050S ribosomal protein L2, chloroplastic OS=Platanu... [more]
RK2_MORIN1.773e-4497.8050S ribosomal protein L2, chloroplastic OS=Morus i... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16808 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908680 ID=DR908680; Name=DR908680; organism=Citrus sinensis; type=EST; length=386bp
GATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTT
GGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAGATG
AATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAA
ATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGC
GAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTG
GGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTG
GGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATG
TTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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