DR908680

Overview
NameDR908680
Unique NameDR908680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_STRPD (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 381
            ++P+GT +HNIE+  GKGG+L RAAGA A+++ +EGK   ++L SGEVR+I   C AT+G VGN   +  ++G+AG   W G RP VRG
Sbjct:  134 NIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQEGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRSRWKGIRPTVRG 222          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_STRPC (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 381
            ++P+GT +HNIE+  GKGG+L RAAGA A+++ +EGK   ++L SGEVR+I   C AT+G VGN   +  ++G+AG   W G RP VRG
Sbjct:  134 NIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQEGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRSRWKGIRPTVRG 222          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_STRPB (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 381
            ++P+GT +HNIE+  GKGG+L RAAGA A+++ +EGK   ++L SGEVR+I   C AT+G VGN   +  ++G+AG   W G RP VRG
Sbjct:  134 NIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQEGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRSRWKGIRPTVRG 222          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_STRP8 (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M18 GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 381
            ++P+GT +HNIE+  GKGG+L RAAGA A+++ +EGK   ++L SGEVR+I   C AT+G VGN   +  ++G+AG   W G RP VRG
Sbjct:  134 NIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQEGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRSRWKGIRPTVRG 222          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_STRP6 (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M6 GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 381
            ++P+GT +HNIE+  GKGG+L RAAGA A+++ +EGK   ++L SGEVR+I   C AT+G VGN   +  ++G+AG   W G RP VRG
Sbjct:  134 NIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQEGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRSRWKGIRPTVRG 222          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_STRP3 (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M3 GN=rplB PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 381
            ++P+GT +HNIE+  GKGG+L RAAGA A+++ +EGK   ++L SGEVR+I   C AT+G VGN   +  ++G+AG   W G RP VRG
Sbjct:  134 NIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQEGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRSRWKGIRPTVRG 222          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_STRP1 (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M1 GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 381
            ++P+GT +HNIE+  GKGG+L RAAGA A+++ +EGK   ++L SGEVR+I   C AT+G VGN   +  ++G+AG   W G RP VRG
Sbjct:  134 NIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQEGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRSRWKGIRPTVRG 222          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_STRGG (50S ribosomal protein L2 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 51/117 (43.59%), Postives = 70/117 (59.83%), Query Frame = 1
Query:   40 PYALEEACTVWEGVLIDQKDESTST--DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            P  L +   V  G   D K  +     ++P+GT IH IE+  G G + AR+AGA  +L+AKEG  A L++PSGE+RL+   C AT+G+VGN   +  + G+AG   W G RP VRGV
Sbjct:  108 PRGLSQGDRVENGPTADIKPGNNLALRNIPVGTTIHAIELRPGGGAKFARSAGASVQLLAKEGTMAHLRMPSGEIRLVDARCRATIGEVGNAEQSNINWGKAGRMRWKGVRPTVRGV 224          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_SHEAM (50S ribosomal protein L2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 43/90 (47.78%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            ++P+G+ +H +E+  GKG Q+AR+AGA  +++A++G+ ATL+L SGE+R +  +C AT+G+VGN     + LG+AG+K W G RP VRGV
Sbjct:  134 NIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARDGEYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAGAKRWRGVRPTVRGV 223          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_RHOPS (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   40 PYALEEACTVWEGVLIDQKDESTST--DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            P  L    +V  G  +D K  +     +MP+GT +HNIE+ +GKGGQ+AR+AG  A+L+ ++     ++L SGE RL+   C+AT+G V N      S+G+AG K WLG+RP  RGV
Sbjct:  107 PQRLSVGDSVIAGSYVDVKPGNVMPLGNMPVGTIVHNIELKIGKGGQIARSAGTYAQLVGRDHDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGV 223          
The following BLAST results are available for this feature:
BLAST of DR908680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STRPD5.193e-2050.5650S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRPC5.193e-2050.5650S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRPB5.193e-2050.5650S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRP85.193e-2050.5650S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRP65.193e-2050.5650S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRP35.193e-2050.5650S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRP15.193e-2050.5650S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STRGG5.193e-2043.5950S ribosomal protein L2 OS=Streptomyces griseus s... [more]
RL2_SHEAM5.193e-2047.7850S ribosomal protein L2 OS=Shewanella amazonensis... [more]
RL2_RHOPS5.193e-2042.7450S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16808 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908680 ID=DR908680; Name=DR908680; organism=Citrus sinensis; type=EST; length=386bp
GATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTT
GGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAGATG
AATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAA
ATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGC
GAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTG
GGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTG
GGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATG
TTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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