DR908680

Overview
NameDR908680
Unique NameDR908680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_LARHH (50S ribosomal protein L2 OS=Laribacter hongkongensis (strain HLHK9) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            ++P+GT IH IE+  GKG QLAR+AGA   L+A+EG  A L+L SGE+R +  +C ATVG+VGN   + + LG+AG+  W G RP VRGV
Sbjct:  134 NIPVGTTIHCIEMQPGKGAQLARSAGASVMLLAREGSYAQLRLRSGEIRKVHIDCRATVGEVGNEEHSLRKLGKAGATRWRGIRPTVRGV 223          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_ERWT9 (50S ribosomal protein L2 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 381
            ++P+G+ +HN+E+  GKGGQ+AR+AG   +++A+EG   TL+L SGE+R +  +C AT+G+VGN     + LG+AG+  W G RP VRG
Sbjct:  134 NIPVGSTVHNVEMKPGKGGQIARSAGTYVQIVAREGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRG 222          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_BLOPB (50S ribosomal protein L2 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 44/90 (48.89%), Postives = 65/90 (72.22%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRG 381
            +++P+G+ IHN+E+  GKGGQLAR+AG+  +++A++G+   L+L SGE+R I   C ATVG+VGN     + LG+AG+  W G RP VRG
Sbjct:  135 SNIPIGSIIHNVEMKPGKGGQLARSAGSYIQIVARDGEYMILRLRSGEIRKIRCECRATVGEVGNAEHMLRMLGKAGANRWRGNRPTVRG 224          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_BART1 (50S ribosomal protein L2 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            +MP+GT IHN+E+  GKGGQ+AR+AGA A+L+ ++   A L+L SGE RL+S +C ATVG V N      + G+AG   W GKRP VRGV
Sbjct:  134 NMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGRDHGMAILRLNSGEQRLVSSSCFATVGAVSNPDHGNINDGKAGRSRWRGKRPHVRGV 223          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_ACICJ (50S ribosomal protein L2 OS=Acidiphilium cryptum (strain JF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.193e-20
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   40 PYALEEACTVWEGVLIDQKDESTS--TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            P  L+    V  GV +D K  +    + +P+GT +HNIE+  G GG+LAR+AG  A+L+ K+   A +KL SGE+RLI   C A++G V N   + + LG+AG K WLG+RP  RGV
Sbjct:  107 PQRLKVGDQVVAGVKVDVKPGNAMPLSAIPVGTIVHNIELKAGAGGKLARSAGTFAQLVGKDQGYAQVKLMSGELRLIRGECMASIGAVSNPDHSNQQLGKAGRKRWLGRRPHNRGV 223          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_SHEPW (50S ribosomal protein L2 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.783e-20
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            ++P+G+ +H +E+  GKG Q+AR+AGA  ++IA++G  ATL+L SGE+R +  +C AT+G+VGN     + LG+AG+K W G RP VRGV
Sbjct:  134 NIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIARDGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAGAKRWRGVRPTVRGV 223          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_SHEHH (50S ribosomal protein L2 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.783e-20
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            ++P+G+ +H +E+  GKG Q+AR+AGA  ++IA++G  ATL+L SGE+R +  +C AT+G+VGN     + LG+AG+K W G RP VRGV
Sbjct:  134 NIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIARDGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAGAKRWRGVRPTVRGV 223          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_SALAI (50S ribosomal protein L2 OS=Salinispora arenicola (strain CNS-205) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.783e-20
Identity = 42/90 (46.67%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            ++P+GT IHN+E+  G G +LAR+AG   +L+ +EG  ATL++PSGE+R +   C A++G++GN   +  + G+AG   W GKRP VRGV
Sbjct:  135 NIPVGTTIHNVELRPGGGAKLARSAGVGIQLLGREGAYATLRMPSGEIRRVDVRCRASIGEIGNADQSNINWGKAGRMRWKGKRPTVRGV 224          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_RUTMC (50S ribosomal protein L2 OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rplB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.783e-20
Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   40 PYALEEACTVWEG--VLIDQKDESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            P+ L    T+  G  V I   +    +++PLG  +H IE+   KG Q+AR+AGA A+LIAKEG   TL+L SGEVR +  +C AT+G+V     + K LG+AG+  W G RP VRGV
Sbjct:  108 PHGLSVGYTIVSGNSVAIQAGNVMPLSNIPLGGVVHCIELKPMKGAQIARSAGAFAQLIAKEGNYVTLRLRSGEVRKVLADCRATIGEVSRSEHSLKKLGKAGATRWRGVRPTVRGV 224          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RL2_RHOPT (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.783e-20
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 1
Query:   40 PYALEEACTVWEGVLIDQKDESTST--DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            P  L    TV  G  +D K  +     +MP+GT +HN+E+ +GKGGQLAR+AG  A+++ ++     L++ SGE RLI   C A +G V N      S+G+AG K WLG+RP  RGV
Sbjct:  107 PQRLAVGDTVIAGAYVDVKPGNVMPLGNMPIGTIVHNVELKIGKGGQLARSAGTYAQIVGRDHDYVILRMNSGEQRLIHGRCIAAIGAVSNPDHMNISIGKAGRKRWLGRRPHNRGV 223          
The following BLAST results are available for this feature:
BLAST of DR908680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LARHH5.193e-2053.3350S ribosomal protein L2 OS=Laribacter hongkongens... [more]
RL2_ERWT95.193e-2047.1950S ribosomal protein L2 OS=Erwinia tasmaniensis (... [more]
RL2_BLOPB5.193e-2048.8950S ribosomal protein L2 OS=Blochmannia pennsylvan... [more]
RL2_BART15.193e-2053.3350S ribosomal protein L2 OS=Bartonella tribocorum ... [more]
RL2_ACICJ5.193e-2044.4450S ribosomal protein L2 OS=Acidiphilium cryptum (... [more]
RL2_SHEPW6.783e-2048.8950S ribosomal protein L2 OS=Shewanella piezotolera... [more]
RL2_SHEHH6.783e-2048.8950S ribosomal protein L2 OS=Shewanella halifaxensi... [more]
RL2_SALAI6.783e-2046.6750S ribosomal protein L2 OS=Salinispora arenicola ... [more]
RL2_RUTMC6.783e-2045.3050S ribosomal protein L2 OS=Ruthia magnifica subsp... [more]
RL2_RHOPT6.783e-2042.7450S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16808 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908680 ID=DR908680; Name=DR908680; organism=Citrus sinensis; type=EST; length=386bp
GATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTT
GGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAGATG
AATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAA
ATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGC
GAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTG
GGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTG
GGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATG
TTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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