DR908680

Overview
NameDR908680
Unique NameDR908680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.696e-42
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGR G+K W GKRPVVRGV
Sbjct:  130 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRVGAKRWRGKRPVVRGV 220          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_LOLPR (50S ribosomal protein L2, chloroplastic OS=Lolium perenne GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.827e-42
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTA+HNIEIT G+GGQLARAAGAVAKLIAKEGKSATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAMHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_HORVU (50S ribosomal protein L2, chloroplastic OS=Hordeum vulgare GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.827e-42
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTA+HNIEIT G+GGQLARAAGAVAKLIAKEGKSATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAMHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_EPIVI (50S ribosomal protein L2, plastid OS=Epifagus virginiana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.827e-42
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGK ATLKLPSGEVRLISKNCSATVGQVGNVG N+KSLGRAGSK WLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGKLATLKLPSGEVRLISKNCSATVGQVGNVGVNKKSLGRAGSKRWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_AGRST (50S ribosomal protein L2, chloroplastic OS=Agrostis stolonifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.827e-42
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTA+HNIEIT G+GGQLARAAGAVAKLIAKEGKSATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAMHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_SORBI (50S ribosomal protein L2, chloroplastic OS=Sorghum bicolor GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.305e-42
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 1
Query:   64 TVWEGVLIDQKDESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            T+  G  +     +  TDMPLGTAIHNIEIT G+GGQLARAAGAVAKLIAKEGK ATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  113 TIVSGTKVPISMGNALTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 219          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_SACOF (50S ribosomal protein L2, chloroplastic OS=Saccharum officinarum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.075e-41
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEIT G+GGQLARAAGAVAKLIAKEGK ATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_SACHY (50S ribosomal protein L2, chloroplastic OS=Saccharum hybrid GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.075e-41
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEIT G+GGQLARAAGAVAKLIAKEGK ATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_MAIZE (50S ribosomal protein L2, chloroplastic OS=Zea mays GN=rpl2-A PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.075e-41
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEIT G+GGQLARAAGAVAKLIAKEGK ATL+LPSGEVRL+S+NC ATVGQVGNVG NQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.405e-41
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 1
Query:  118 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            MPLGTA+HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS NCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 220          
The following BLAST results are available for this feature:
BLAST of DR908680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_PEA3.696e-4294.5150S ribosomal protein L2, chloroplastic OS=Pisum s... [more]
RK2_LOLPR4.827e-4291.2150S ribosomal protein L2, chloroplastic OS=Lolium ... [more]
RK2_HORVU4.827e-4291.2150S ribosomal protein L2, chloroplastic OS=Hordeum... [more]
RK2_EPIVI4.827e-4294.5150S ribosomal protein L2, plastid OS=Epifagus virg... [more]
RK2_AGRST4.827e-4291.2150S ribosomal protein L2, chloroplastic OS=Agrosti... [more]
RK2_SORBI6.305e-4279.4450S ribosomal protein L2, chloroplastic OS=Sorghum... [more]
RK2_SACOF1.075e-4191.2150S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_SACHY1.075e-4191.2150S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_MAIZE1.075e-4191.2150S ribosomal protein L2, chloroplastic OS=Zea may... [more]
RK2_OENPA1.405e-4195.5150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16808 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908680 ID=DR908680; Name=DR908680; organism=Citrus sinensis; type=EST; length=386bp
GATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTT
GGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAGATG
AATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAA
ATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGC
GAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTG
GGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTG
GGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATG
TTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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