DR908680

Overview
NameDR908680
Unique NameDR908680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.405e-41
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 1
Query:  118 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            MPLGTA+HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS NCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 220          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.405e-41
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 1
Query:  118 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            MPLGTA+HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS NCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 220          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.405e-41
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 1
Query:  118 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            MPLGTA+HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS NCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 220          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.405e-41
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 1
Query:  118 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            MPLGTA+HNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS NCSATVGQVGNVG NQKSLGRAGSK WLGKRPVVRGV
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISNNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGV 220          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_CUSEX (50S ribosomal protein L2, plastid OS=Cuscuta exaltata GN=rpl2 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.834e-41
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            T+MPLGTAIHN+EIT GKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVG NQKSLGRAG++ WLGKRPVVRGV
Sbjct:  131 TEMPLGTAIHNLEITRGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAQRWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_CUSRE (50S ribosomal protein L2, plastid OS=Cuscuta reflexa GN=rpl2 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.970e-41
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            T+MPLGTAIHN+EIT GKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISK+CSATVGQVGNVG NQKSLGRAG++ WLGKRPVVRGV
Sbjct:  131 TEMPLGTAIHNLEITRGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKSCSATVGQVGNVGVNQKSLGRAGAQRWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_JASNU (50S ribosomal protein L2, chloroplastic OS=Jasminum nudiflorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.104e-41
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            T MPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATLKLPSGEVRLIS+NCSATVGQVGNVGA  KSLG+AGSK WLGKRPVVRGV
Sbjct:  131 THMPLGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISQNCSATVGQVGNVGAKHKSLGKAGSKRWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.028e-40
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            T++PLGTAIHNIEITLGKGGQLARAAGAVAKLI+KEGKSA +KLPSGEVRLIS+NCSATVGQVGNVG N+KSLGRAGSK WLGKRPVVRGV
Sbjct:  131 TNIPLGTAIHNIEITLGKGGQLARAAGAVAKLISKEGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGSKRWLGKRPVVRGV 221          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_CYCTA (50S ribosomal protein L2, chloroplastic OS=Cycas taitungensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.580e-37
Identity = 75/91 (82.42%), Postives = 85/91 (93.41%), Query Frame = 1
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TD+PLGTAIH+IEITLGKGGQLARAAGAVA+LIAKEG+S TL+LPSGE+RLIS+NCSAT+GQVGNV AN  +LG+AGSK WLGKRP VRGV
Sbjct:  134 TDVPLGTAIHSIEITLGKGGQLARAAGAVAELIAKEGRSTTLRLPSGEIRLISENCSATIGQVGNVNANNGTLGKAGSKRWLGKRPRVRGV 224          
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_CUSGR (50S ribosomal protein L2, plastid OS=Cuscuta gronovii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.360e-36
Identity = 72/90 (80.00%), Postives = 83/90 (92.22%), Query Frame = 1
Query:  115 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            ++PLGT++HN+EIT GKGGQLARAAGA AKLIAKEG+SATLKLPSGE+R ISK CSATVGQVGN+G NQKSLG+AG K WLGKRP+VRG+
Sbjct:  129 EIPLGTSLHNLEITRGKGGQLARAAGAAAKLIAKEGQSATLKLPSGELRFISKQCSATVGQVGNIGVNQKSLGKAGVKRWLGKRPIVRGL 218          
The following BLAST results are available for this feature:
BLAST of DR908680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_OENGL1.405e-4195.5150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENEH1.405e-4195.5150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENBI1.405e-4195.5150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENAR1.405e-4195.5150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_CUSEX1.834e-4192.3150S ribosomal protein L2, plastid OS=Cuscuta exalt... [more]
RK2_CUSRE6.970e-4191.2150S ribosomal protein L2, plastid OS=Cuscuta refle... [more]
RK2_JASNU9.104e-4192.3150S ribosomal protein L2, chloroplastic OS=Jasminu... [more]
RK2_PELHO2.028e-4090.1150S ribosomal protein L2, chloroplastic OS=Pelargo... [more]
RK2_CYCTA3.580e-3782.4250S ribosomal protein L2, chloroplastic OS=Cycas t... [more]
RK2_CUSGR1.360e-3680.0050S ribosomal protein L2, plastid OS=Cuscuta grono... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16808 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908680 ID=DR908680; Name=DR908680; organism=Citrus sinensis; type=EST; length=386bp
GATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTT
GGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAGATG
AATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAA
ATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGC
GAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTG
GGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTG
GGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATG
TTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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