CX047024

Overview
NameCX047024
Unique NameCX047024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = -1
Query:  280 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 414
            GD  S IFDA AGIAL+  F+KLV+WYDNEWGYS RV+DLI +++
Sbjct:  287 GDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  277 SSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 402
            SS FDA+AGI+L+ +FVKLV+WYDNEWGYS RV DL+VH++K
Sbjct:  338 SSTFDAEAGISLNPRFVKLVAWYDNEWGYSNRVKDLMVHVAK 379          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = -1
Query:  283 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 420
            F GD+ SSIFDA AGI L+  F K+V+WYDNEWGYS RVVDL++ M
Sbjct:  289 FQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSM 334          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = -1
Query:  283 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 420
            F GD+ SSIFDA AGI L+  F K+V+WYDNEWGYS RVVDL++ M
Sbjct:  289 FQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSM 334          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.700e-12
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+V+M+  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.700e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F  DS SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M+  +
Sbjct:  284 FNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMASKE 333          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.700e-12
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+V+M+  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.751e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = -1
Query:  271 DSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HM+  +
Sbjct:  289 DTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F   + SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = -1
Query:  283 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 420
            F+GD+ SS+FDA AGI+ +  FVKL+SWYDNE+GYS RV DL+++M
Sbjct:  286 FIGDTHSSMFDAGAGISFNDNFVKLISWYDNEFGYSHRVADLLLYM 331          
The following BLAST results are available for this feature:
BLAST of CX047024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3P_COCP75.130e-1266.67Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PA_GUITH5.130e-1271.43Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P1_ANAVT5.130e-1267.39Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP5.130e-1267.39Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_MUSPF6.700e-1264.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_CRIGR6.700e-1264.00Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_CANFA6.700e-1264.00Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3P_PONAB8.751e-1265.96Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_RABIT1.143e-1164.00Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_ONCMY1.143e-1163.04Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F10-L20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047024 ID=CX047024; Name=CX047024; organism=Citrus sinensis; type=EST; length=420bp
TTGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAA
CAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAAT
CTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAA
ACAATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACAT
TTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTC
AAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATC
CACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCT
TCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTT
GACCTACTGTCACCAACAAA
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