CX047024

Overview
NameCX047024
Unique NameCX047024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.060e-13
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F GD RSSIFDA AGIAL+  FVKLV+WYDNE+GYS RV DL+ HM+  +
Sbjct:  284 FNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDLMAHMASKE 333          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.060e-13
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = -1
Query:  280 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 420
            F+G S SSIFD KAGI LS  FVKL+SWYDNE+GYST+VVDL+ H++
Sbjct:  285 FLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.915e-13
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F+ +  S +FDA AGI L+ +F KLV+WYDNEWGYS RVVDLI H++K Q
Sbjct:  286 FIHEEASCVFDAGAGIMLNSRFCKLVAWYDNEWGYSNRVVDLIAHVAKLQ 335          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.915e-13
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  277 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 420
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+G+S RVVD++  +SK
Sbjct:  284 FLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVDMVELVSK 331          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 32/47 (68.09%), Postives = 43/47 (91.49%), Query Frame = -1
Query:  280 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 420
            F+ D+RSSIFDA+AGI LS +FVKL++WYDNE+GYSTRVVDL+ +++
Sbjct:  285 FLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  277 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 420
            FVG + S IFDAKAGIAL+ +F+KLV+WYDNEWGY+ RV D +V+++K
Sbjct:  288 FVGSNYSMIFDAKAGIALNSRFMKLVAWYDNEWGYARRVCDEVVYVAK 335          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHM+  +
Sbjct:  273 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
The following BLAST results are available for this feature:
BLAST of CX047024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3P_DANRE6.060e-1368.00Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_CANAL6.060e-1370.21Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3PC_GRAVE7.915e-1362.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_CANGA7.915e-1368.75Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_PICCI1.034e-1268.09Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P1_AGABI1.034e-1264.58Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P_SPECI1.350e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_SHEEP1.350e-1266.00Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_PIG1.350e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_BOVIN1.350e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F10-L20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047024 ID=CX047024; Name=CX047024; organism=Citrus sinensis; type=EST; length=420bp
TTGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAA
CAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAAT
CTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAA
ACAATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACAT
TTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTC
AAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATC
CACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCT
TCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTT
GACCTACTGTCACCAACAAA
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