CN189327

Overview
NameCN189327
Unique NameCN189327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189327 vs. ExPASy Swiss-Prot
Match: IDHP_DICDI (Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.872e-36
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 2
Query:  407 RYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVF 679
            R  + +KCATITPDE RVKEF LK MWKSPNGTIRNIL+GTVFR PIICKN+P LV GW KPI IGRHA GDQY+ATD V+ GPGKL+++F
Sbjct:   89 RAKIGVKCATITPDEARVKEFGLKEMWKSPNGTIRNILDGTVFRGPIICKNLPLLVPGWKKPIIIGRHAHGDQYKATDFVVNGPGKLEMIF 179          

HSP 2 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 38/62 (61.29%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   19 QKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQA 204
            ++IKV  P+VEMDGDE TR++W+ IK KLI P++++  +Y+DLGLPNRDAT+DQVTI +A A
Sbjct:   25 KRIKVTGPVVEMDGDEQTRIMWESIKSKLIFPYVDITPEYYDLGLPNRDATNDQVTIDAANA 86          
BLAST of CN189327 vs. ExPASy Swiss-Prot
Match: IDHH_YEAST (Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae GN=IDP3 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35
Identity = 70/93 (75.27%), Postives = 76/93 (81.72%), Query Frame = 2
Query:  407 RYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFGN 685
            +Y VA+KCATITPDE R+KEFNLK MWKSPNGTIRNIL GTVFREPII   IPRLV  W KPI IGRHAFGDQYRATD  I+  GKL+L F +
Sbjct:   66 KYGVAVKCATITPDEARMKEFNLKEMWKSPNGTIRNILGGTVFREPIIIPKIPRLVPHWEKPIIIGRHAFGDQYRATDIKIKKAGKLRLQFSS 158          

HSP 2 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   22 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKY 216
            KIKV +PIVEMDGDE TRVIWKLIK+KLI P+L++D+KY+DL +  RD T+DQVT  S+ ATLKY
Sbjct:    3 KIKVVHPIVEMDGDEQTRVIWKLIKEKLILPYLDVDLKYYDLSIQERDRTNDQVTKDSSYATLKY 67          
BLAST of CN189327 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.536e-35
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 2
Query:  407 RYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVF 679
            +Y V IKCATITPDE RVKEFNL +MWKSPNGTIRNIL GTVFREPI+   IPRLV  W KPI IGRHA GDQY+ATD +I GPG L+LV+
Sbjct:   82 KYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVY 172          

HSP 2 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 1
Query:   16 FQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKY 216
            F KIKV  P+VE+DGDEMTR+IW  IK KLI P+L++D+KY+DL + +RDAT D++T  +A+A  KY
Sbjct:   17 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKY 83          
BLAST of CN189327 vs. ExPASy Swiss-Prot
Match: IDH2_CANTR (Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 9.536e-35
Identity = 66/91 (72.53%), Postives = 75/91 (82.42%), Query Frame = 2
Query:  407 RYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVF 679
            +Y V +KCATITPDE RVKEFNLK+MW SPNGT+RN++ GTVFREPI+  NIPR+V  W KPI IGRHAFGDQY+ATD VI   G LKLVF
Sbjct:   69 QYGVGVKCATITPDEARVKEFNLKKMWLSPNGTLRNVIGGTVFREPIVIDNIPRIVPSWEKPIIIGRHAFGDQYKATDVVIPAAGDLKLVF 159          

HSP 2 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1
Query:   13 EFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKY 216
            E QKI V NPIVEMDGDEMTR+IW+ IKDKLI P+L +D+KY+DLG+  RD TDD+VT  +A+A L+Y
Sbjct:    3 EIQKITVKNPIVEMDGDEMTRIIWQFIKDKLILPYLNVDLKYYDLGIEYRDKTDDKVTTDAAEAILQY 70          
BLAST of CN189327 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.245e-34
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = 2
Query:  407 RYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVF 679
            R  V IKCATITPDE RV EF LK MWKSPNGTIRN L GT+FREPI+CKN+PRLV+ W K I IGRHAFGDQYRATD V++G GKL+L +
Sbjct:   67 RLKVGIKCATITPDEARVTEFGLKEMWKSPNGTIRNTLGGTLFREPIVCKNVPRLVTCWNKSIVIGRHAFGDQYRATDFVVKGAGKLELTY 157          

HSP 2 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   19 QKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQA 204
            +KI V+NP+  + GDE TRVIW LI+ KLI PFL+L ++ +DLG+  RD T+DQVTI +A A
Sbjct:    3 EKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGIEYRDKTNDQVTIDAANA 64          
BLAST of CN189327 vs. ExPASy Swiss-Prot
Match: IDHC_YEAST (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae GN=IDP2 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.624e-34
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 2
Query:  407 RYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVF 679
            +Y VA+KCATITPDE RV+EF+LK+MWKSPNGTIRNIL GTVFREPII   IPRLV  W KPI IGRHAFGDQY+ATD ++   G+L+LV+
Sbjct:   66 KYGVAVKCATITPDEARVEEFHLKKMWKSPNGTIRNILGGTVFREPIIIPRIPRLVPQWEKPIIIGRHAFGDQYKATDVIVPEEGELRLVY 156          

HSP 2 Score: 99.7525 bits (247), Expect = 1.746e-20
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   22 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKY 216
            KIKVANPIVEMDGDE TR+IW LI+DKL+ P+L++D+KY+DL +  RD T+DQVT+ SA ATLKY
Sbjct:    3 KIKVANPIVEMDGDEQTRIIWHLIRDKLVLPYLDVDLKYYDLSVEYRDQTNDQVTVDSATATLKY 67          
BLAST of CN189327 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.181e-34
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 2
Query:  407 RYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVF 679
            ++ V +KCATITPDE RV+EFNLK+MW SPNGTIRNIL GT+FREPI+  N+PRLV GWTKPI IGRHAFGDQYRAT+  +  PG + L F
Sbjct:   69 KHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTF 159          

HSP 2 Score: 93.9745 bits (232), Expect = 9.580e-19
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   22 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKY 216
            KIKV+ P+VE+DGDEMTRVIWKLIKD LI P+L++ + Y+DLG+ +RDATDDQVTI +A A  K+
Sbjct:    6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKH 70          
BLAST of CN189327 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.181e-34
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 2
Query:  407 RYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVF 679
            ++ V +KCATITPDE RV+EFNLK+MW SPNGTIRNIL GT+FREPI+  N+PRLV GWTKPI IGRHAFGDQYRAT+  +  PG + L F
Sbjct:   69 KHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTF 159          

HSP 2 Score: 93.9745 bits (232), Expect = 9.580e-19
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   22 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKY 216
            KIKV+ P+VE+DGDEMTRVIWKLIKD LI P+L++ + Y+DLG+ +RDATDDQVTI +A A  K+
Sbjct:    6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKH 70          
BLAST of CN189327 vs. ExPASy Swiss-Prot
Match: IDH1_CANTR (Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.349e-33
Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 2
Query:  410 YNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVF 679
            Y V +KCATITPDE RVKEF+LK+MW SPNGTIRNIL GTVFRE II   IPRL+ GW KPI IGRHAFGDQY+ATD VI  PG+L+L F
Sbjct:   93 YGVGVKCATITPDEARVKEFHLKKMWLSPNGTIRNILGGTVFRESIIIPCIPRLIPGWEKPIVIGRHAFGDQYKATDLVINEPGRLELRF 182          

HSP 2 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 43/65 (66.15%), Postives = 57/65 (87.69%), Query Frame = 1
Query:   22 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKY 216
            KIKV NPIVE+DGDEMTR+IW+ IKD+LI P+L++D+KY+DLG+ +RDATDDQ+TI +A A  +Y
Sbjct:   29 KIKVKNPIVELDGDEMTRIIWQKIKDQLILPYLDVDLKYYDLGIESRDATDDQITIDAANAIKEY 93          
BLAST of CN189327 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.068e-33
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 2
Query:  410 YNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKL 673
            Y V +KCATITPDE RV+EF LK+MWKSPNGTIRNIL G VFREPI+ KN+PRLV GWT PI +GRHAFGDQY+ATD  + G G L +
Sbjct:   67 YGVGVKCATITPDEARVEEFGLKKMWKSPNGTIRNILGGVVFREPIVIKNVPRLVPGWTDPIVVGRHAFGDQYKATDFKVPGAGTLTM 154          

HSP 2 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   22 KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKY 216
            KIKV NP+VE+DGDEMTR+IW+ I+++LI P+L++D+KY+DL +  RD T DQ+TI +A A  +Y
Sbjct:    3 KIKVKNPVVEIDGDEMTRIIWEWIRERLILPYLDVDLKYYDLSVEKRDETSDQITIDAANAIKEY 67          
The following BLAST results are available for this feature:
BLAST of CN189327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHP_DICDI3.872e-3674.73Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHH_YEAST7.301e-3575.27Isocitrate dehydrogenase [NADP] OS=Saccharomyces c... [more]
IDHP_YEAST9.536e-3574.73Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH2_CANTR9.536e-3572.53Isocitrate dehydrogenase [NADP] peroxisomal OS=Can... [more]
IDHC_DICDI1.245e-3473.63Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDHC_YEAST3.624e-3472.53Isocitrate dehydrogenase [NADP] cytoplasmic OS=Sac... [more]
IDH_MYCTU6.181e-3470.33Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]
IDH_MYCBO6.181e-3470.33Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]
IDH1_CANTR2.349e-3374.44Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH_SPHYA3.068e-3371.59Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189327 ID=CN189327; Name=CN189327; organism=Citrus sinensis; type=EST; length=755bp
GAGGGAGAAATGGAATTCCAGAAGATCAAGGTGGCCAATCCCATCGTTGA
AATGGACGGTGATGAAATGACTCGAGTTATTTGGAAACTCATCAAGGATA
AGCTAATTAATCCGTTTCTGGAGTTGGATATCAAGTACTTTGACCTTGGC
CTTCCCAACCGTGATGCCACCGACGATCAAGTTACCATTCAAAGCGCTCA
AGCTACTCTCAAGTACCTCTTTTTCTCTATGTTTCTGATCATAATCCTAA
TCATGTGGCCGCTGTTGTATTGTCCTTGTAAATTGTAATTGAGAGTATTT
ATAAACTTTAACCTGTTTTGCTGCTACGCCTTTGCCATTAGTTTATTTAT
ATCACTTCCTTCACTCTTTTGTGTGTTCAGTTTTCTACTTTTGCTCTTGT
TATTTTAGGTATAACGTAGCTATTAAGTGTGCAACTATCACTCCAGATGA
AGTGCGGGTTAAGGAATTTAACTTGAAAAGAATGTGGAAGAGTCCTAATG
GAACAATTCGCAACATTCTAAATGGCACAGTTTTTAGAGAACCGATTATC
TGTAAAAACATCCCCAGGCTGGTCTCAGGTTGGACTAAGCCAATCTGCAT
TGGGAGGCATGCTTTTGGTGATCAGTATCGAGCAACTGATGCTGTTATAC
AAGGGCCCGGGAAACTTAAGTTAGTCTTTGGCAATTGCCATGTTTGCAGT
TCCCGATGGACTTAATCAGAAGACAGAGTGGGAGGTCTACAGTTTCACTG
GTGCT
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