CN189311

Overview
NameCN189311
Unique NameCN189311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 1.316e-37
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQNTQGLIFV+DSNDR+RI E  +EL +ML EDELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYE LDWLSN ++ +
Sbjct:   81 YFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 2.931e-37
Identity = 72/99 (72.73%), Postives = 88/99 (88.89%), Query Frame = -2
Query:  176 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIAN 472
            Y++NT+G+IFV+DSNDR RI EAR+ + RMLNEDELR+A  LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQ+TCATSGEGLYE L+WLSN++ N
Sbjct:   81 YYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 179          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 3.828e-37
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQNTQGLIFV+DSNDR+RI EA +EL +ML EDELRDAVLLVFANKQDLPNAM  +E+TDKL L +LR R WY+Q+TCAT G GLYE LDWLSN ++ +
Sbjct:   81 YFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLVFANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 6.529e-37
Identity = 70/100 (70.00%), Postives = 85/100 (85.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQNTQGLIFV+DSNDR+R+ E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+ LDWLS+ ++ +
Sbjct:   81 YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 6.529e-37
Identity = 70/100 (70.00%), Postives = 85/100 (85.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQNTQGLIFV+DSNDR+R+ E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+ LDWLS+ ++ +
Sbjct:   81 YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 6.529e-37
Identity = 70/100 (70.00%), Postives = 85/100 (85.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQNTQGLIFV+DSNDR+R+ E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+ LDWLS+ ++ +
Sbjct:   81 YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 6.529e-37
Identity = 73/100 (73.00%), Postives = 84/100 (84.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQNTQGLIFV+DSNDR+RI E  DEL +ML  DELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYE LDWLSN ++ +
Sbjct:   81 YFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 6.529e-37
Identity = 73/100 (73.00%), Postives = 84/100 (84.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQNTQGLIFV+DSNDR+RI E  DEL +ML  DELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYE LDWLSN ++ +
Sbjct:   81 YFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 8.527e-37
Identity = 67/99 (67.68%), Postives = 90/99 (90.91%), Query Frame = -2
Query:  176 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIAN 472
            Y+ NT GLIFV+DSNDR+RI +AR+ELHRM+NE+EL+DA++LVFANKQDLPNAM+AAE+T+KL L+++R+R+W+IQSTCAT G+GLYE  DWL+ ++ N
Sbjct:   81 YYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNN 179          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.455e-36
Identity = 69/100 (69.00%), Postives = 86/100 (86.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQNTQGLIFV+DSNDR+R+ E+ +EL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL +LR R WY+Q+TCAT G GLY+ LDWLS+ ++ +
Sbjct:   81 YFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180          
The following BLAST results are available for this feature:
BLAST of CN189311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
ARF4_BOVIN1.316e-3773.00ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF1_YEAST2.931e-3772.73ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF4_XENLA3.828e-3773.00ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF5_RAT6.529e-3770.00ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE6.529e-3770.00ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN6.529e-3770.00ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF4_PONAB6.529e-3773.00ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN6.529e-3773.00ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF1_PLAFA8.527e-3767.68ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF5_CHICK1.455e-3669.00ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189311 ID=CN189311; Name=CN189311; organism=Citrus sinensis; type=EST; length=473bp
TATCCAACCAACAATTCTTCTATTACAATATAATTGTAAAGATCCTAGGA
CCAAAACAACACGACAACCCAAACGTCTCAAACAAAAAGGGTTAAAAAGA
AAAAAAAATAGATAATATTCACCCCTGCATCCAGAATTGCCAGTCCGCAA
AAAGATCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAA
TCCAGAACTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGAT
GTACCAGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCT
CAGCAGCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGC
AACACTGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATC
CCTTGCTTCTAAAATACGGTCTCTGTCATTGCTGTCCAAAACAAAAATGA
GACCTTGAGTGTTCTGGAAATAA
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