CN189296

Overview
NameCN189296
Unique NameCN189296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189296 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 62/177 (35.03%), Postives = 98/177 (55.37%), Query Frame = 2
Query:  236 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI-CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG----AEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 742
            +AG+AEFI+TF+F++    + +   K  ++   +  G+   + A    +FV V   A ISGGH+NPAV  G F+   ++L R + Y++ Q LG+I C A +V               ++V A G ++G G+G     EI+ TF LVYTV+ +A D K+     ++ I+AP+ IGF V
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLV-----------FVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIV 181          
BLAST of CN189296 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.000e-16
Identity = 60/184 (32.61%), Postives = 88/184 (47.83%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVSLGH 763
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  Y+  Q LGA+ GA V+         G LA   N +  G + G     EI  T   V  +F+  D +R+ R   V     L +GF+   ++LGH
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFS---LTLGH 172          
BLAST of CN189296 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 63/188 (33.51%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  197 LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK---GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 742
            ++ PG LK      A +AEFI+T +F++    + M   K     +T   G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R L Y + Q LG+     +++   G +  G +G           G +  + L  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   14 VYHPGALK------AALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG---------LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIV 182          
BLAST of CN189296 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.328e-15
Identity = 63/185 (34.05%), Postives = 93/185 (50.27%), Query Frame = 2
Query:  197 LFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 742
            ++ PG LK      A  AEFI+T +F++    + M   K       +  G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R L Y V Q LG+     +++   G    G+  G   +   G +  + L  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   14 VYHPGALK------AAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTG----GQATGTFGLT--GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIV 182          
BLAST of CN189296 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.328e-15
Identity = 65/186 (34.95%), Postives = 92/186 (49.46%), Query Frame = 2
Query:  206 PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG-LGA---EIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 742
            P E       +A +AEFI+T +F+     + M   K     +T   G+   A A    +FV V   A ISGGH+NPAVT G F+   ++L R + Y + Q LG++    ++K            GG  V A G + G G L A   EI+ TF LVYTV+ +A D K  +    +  +AP+ IGF V
Sbjct:   11 PDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILK---------FATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS----LGTIAPIAIGFIV 183          
BLAST of CN189296 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.040e-15
Identity = 59/176 (33.52%), Postives = 88/176 (50.00%), Query Frame = 2
Query:  236 RAGIAEFIATFLFLYISVLT--VMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG----LGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 742
            RA +AEFI+T +F++    +      +  N   +  G+   A A    +FV V   A ISGGH+NPAVT G+ L   ++L R + Y + Q LG++    ++             GG  + A G + G G    L  EI+ TF LVYTV+ +A D K  +    +  +AP+ IGF V
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLL---------SFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS----LGTIAPIAIGFIV 184          
BLAST of CN189296 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.040e-15
Identity = 59/184 (32.07%), Postives = 88/184 (47.83%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVSLGH 763
            EL+S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   N +    + G     EI  T   V  +F+  D +R+ +   V     L +GF+   ++LGH
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSV----ALAVGFS---LALGH 172          
BLAST of CN189296 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.971e-15
Identity = 61/175 (34.86%), Postives = 89/175 (50.86%), Query Frame = 2
Query:  236 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG------AEIIGTFVLVYTVFSAT-DAKRSARDSHVPILAPLPIGF 736
            RA I+EFIAT +F++ +  +V+ + K     ST G +  +A A    + V V     ISGGH+NPAVT G  +  ++SL RA+ Y V Q LGA+    ++          RLA G  +   G+    G+G       E + TF L+Y  ++   D KR     HV  +APL +GF
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLL----------RLATG-GMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGF 185          
BLAST of CN189296 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.971e-15
Identity = 60/184 (32.61%), Postives = 87/184 (47.28%), Query Frame = 2
Query:  212 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVSLGH 763
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   N +  G +       EI  T   V  +F+  D +R+ R   V     L +GF+   ++LGH
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFS---LTLGH 172          
BLAST of CN189296 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 57/178 (32.02%), Postives = 93/178 (52.25%), Query Frame = 2
Query:  236 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 742
            RA +AEF +TF+F++    + + +VK   ++  S   +  +A A    +F  V  +  +SGGH+NPAV+ G  +  ++S+ RA++Y + Q LG+I  A V++               N+   G+    G+G       E++ TF L+YTV+ +A D KR A    V  +APL IG  V
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN-----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIV 183          
The following BLAST results are available for this feature:
BLAST of CN189296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
TIP1_MEDSA8.000e-1635.03Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
MIP_MOUSE8.000e-1632.61Lens fiber major intrinsic protein OS=Mus musculus... [more]
TIP11_ORYSJ1.045e-1533.51Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE2.328e-1534.05Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP11_ARATH2.328e-1534.95Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_ARATH3.040e-1533.52Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
MIP_HUMAN3.040e-1532.07Lens fiber major intrinsic protein OS=Homo sapiens... [more]
TIP31_MAIZE3.971e-1534.86Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
MIP_CAVPO3.971e-1532.61Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIPA_PHAVU6.773e-1532.02Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189296 ID=CN189296; Name=CN189296; organism=Citrus sinensis; type=EST; length=782bp
GAGGCATCAAACGGCCACAAACAAAAAAGCAAGTGCTTCTTATTGACTAT
TTTGTGTTTTTGAGGGAGTAGCAGAAATGGAAGGCAAAGAAGAGGATGTT
AGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGACGGCGGC
TCAGACCCAAGATGGCAAGGACTACGTTGAACCCCCACCGGCGCCGCTCT
TCGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGGTATAGCC
GAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGACAGTGAT
GGGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATTCAAGGGA
TTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTGCACAGCT
GGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCCTGTTCTT
GGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTGATGCAGT
GTCTGGGAGCCATCTGCGGTGCTGGCGTTGTTAAGGGTTTCATGGGTGCC
GGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTCATGGCTA
CACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTTGTTCTTG
TCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAGCGCCAGGGACTCT
CATGTTCCTATTTTGGCTCCTCTGCCCATTGGGTTCGCTGTGTTTTTGGT
TTCACTTGGCCACTATCCCAATTACCGGAACT
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