DR908648

Overview
NameDR908648
Unique NameDR908648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908648 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.320e-13
Identity = 55/179 (30.73%), Postives = 81/179 (45.25%), Query Frame = 2 
Query:    2 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV-RTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQV--LEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 529
            G+  KYDP+ K  TVL+  L    G ++S D SF +  + +   + +YW+ G KAG  E F      PDN+ R    G FWVA                          +++ T       G  +  AVK S  GK+LQ   L+D  G  +  +SEV E  G+L++G++  PF  +  L
Sbjct:  184 GKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSNPDNIKRIGSTGNFWVA------------------------SVVNSAT-------GPTNPSAVKVSSAGKVLQTIPLKDKFGDTL--VSEVNEYKGQLYIGALFGPFAGILKL 329
The following BLAST results are available for this feature:
BLAST of DR908648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
STS3_ARATH2.320e-1330.73Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16776 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-54_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908648 ID=DR908648; Name=DR908648; organism=Citrus sinensis; type=EST; length=602bp
TGGTAGGGTTCTAAAGTATGATCCAACTACAAAACAGACCACTGTCCTTT
TGAGGAATCTTCAATTCCCTAATGGGCTTTCCCTGAGCAAGGACAAATCC
TTCTTTGTCTTTTGTGAAGGATCTGTTGGCAGATTACACAAGTACTGGTT
GATAGGTGAGAAAGCGGGTAATTTAGAGGCATTTGCCATCTTACCAGGAT
ATCCTGACAACGTCCGCACAAATGAAAAGGGTGAGTTTTGGGTGGCAATC
CACTGTCGGCGGAGCTTGTACTCTCATCTGATGGCTTTATACCCTAAAAT
TAGGCATTTCGTGCTCAAGCTCCCAATTTCAGCCAAGACTCATTACCTGA
TTCACATTGGGGGAAGGCTTCATGCTATGGCTGTCAAATACAGCCCAGAG
GGAAAGATTTTGCAGGTATTGGAGGACAGTAAGGGGAAGGTTGTTAAAGC
AATCAGTGAAGTTGAAGAGAAGGACGGGAAGCTGTGGATGGGCAGTGTGT
TGATGCCTTTTGTTGCAGTTTATGACTTGTCTTGAGGTAGAAGCACGTCT
ATTTATGATTAAAAGCTGTTGTTCTTTACGCTGGAGGTAGATAGATCGTT
TT
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