CN189295

Overview
NameCN189295
Unique NameCN189295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = -1
Query:  326 HG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA-ALYHQVVIRAIPFK 667
            HG  T G GL  E+I TF LV+T+F++ D+KR+     +     L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP +GA LA ALY  V    +  K
Sbjct:  154 HGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELK 262          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17
Identity = 51/116 (43.97%), Postives = 68/116 (58.62%), Query Frame = -1
Query:  326 HG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA-ALYHQVVIRAIPFK 667
            HG  T G GL  E+I TF LV+T+F++ D+KR+     +     L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP +GA LA  LY  V    +  K
Sbjct:  151 HGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGGLYEYVFCPDVELK 259          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = -1
Query:  326 HG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA-ALYHQVVIRAIPFK 667
            HG  T G GL  E+I TF LV+T+F++ D+KR+     +     L IGF+V + HL  I  TG  +NPARS G A+I      W +HWI+WVGP +GA LA ALY  V    +  K
Sbjct:  151 HGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWANHWIYWVGPIMGAVLAGALYEYVFCPDVELK 259          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  344 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 664
            G + G GLG EI+ TF LV  V + TD +R      VP    L IG +V L HL  I  TG G+NPARS G+A++    + +  HWIFWVGP +G   AA+ +  ++
Sbjct:  136 GVSAGQGLGVEILVTFQLVLCVVAVTDRRRHDVSGSVP----LAIGLSVALGHLIAIDYTGCGMNPARSFGSAVL---TKNFTYHWIFWVGPMIGGAAAAIIYDFIL 235          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  344 VAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 673
            VA G ++  GL  EII TF LVY V+S A D KR +    + I+APL IG  V    L   P  G  +NPAR+ G A++  +   W +HWI+WVGPF+G  LAAL ++ +I
Sbjct:  143 VASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALVGWR---WSNHWIYWVGPFIGGALAALIYEYMI 246          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 49/116 (42.24%), Postives = 67/116 (57.76%), Query Frame = -1
Query:  326 HG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA-ALYHQVVIRAIPFK 667
            HG  + G GL  E+I TF LV+T+F++ D+KR+     +     L IG +V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP +GA LA  LY  V    +  K
Sbjct:  151 HGNLSAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYVFCPDVELK 259          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  344 VAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 673
            +A G    +GL  EII TF LVY V+S   D KR +    + I+APL IG  V    L   P +G  +NPAR+ G A++  +   W DHWI+WVGPF+G+ LAAL ++ ++
Sbjct:  143 LASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWR---WHDHWIYWVGPFIGSALAALIYEYMV 246          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = -1
Query:  344 GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 652
            G G   E++ T   +  VF++ D +   R    P  A LP+GF++ L HL  IP TG G+NPARS   A+I    R + +HW+FW GP +GA LAAL +++ +
Sbjct:  128 GQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVI---TRNFTNHWVFWAGPLLGAALAALLYELAL 223          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = -1
Query:  344 TKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 658
            T G  +  E+  T  LV  +F +TD +R  +  H      L IGF+V L HL  I  TG  +NPARSL  AI+  K   +DDHW+FW+GP VGA +A+L +  V+
Sbjct:  126 TAGQAVTVELFLTLQLVLCIFPSTDKRRGKQLGH----PALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  356 TKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 658
            T G  +  E+I TF L   +FS+TD++R++     P+ +P L IG +V L HL  I  TG  +NPARS G A++ N  R    HW+FWVGP VGA LAA+ +
Sbjct:  127 TPGKAMVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN--RFSPSHWVFWVGPIVGAMLAAILY 221          
The following BLAST results are available for this feature:
BLAST of CN189295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
AQP4_NOTAL1.937e-1744.83Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_DIPME5.636e-1743.97Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_MOUSE9.614e-1744.83Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQPA_RANES1.256e-1642.99Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
TIP32_ARATH3.653e-1645.05Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
AQP4_BOVIN8.139e-1642.24Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
TIP31_ARATH2.368e-1543.24Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
MIP_CHICK3.093e-1540.78Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP2_SHEEP3.093e-1542.86Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
AQP5_RAT5.276e-1545.10Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189295 ID=CN189295; Name=CN189295; organism=Citrus sinensis; type=EST; length=676bp
TTTTTTTTTTTTTTTTTAAAGAACTAGTTTTGTCCATATTATTACCAAGA
TGACATTGCACAAATCCATAGCCATACAAATGTACAAAGTGACAGCGCCC
ACCTACTTAACCATGGGCCCATCCGTCATCATCATCCACCTCTCTTCAAA
ATTAAAAAAAAAAAAAACGTTTTAAGGAAGGAAAACAGAAAAGCAGGCCC
AGGTCCAGCACCAGCAGATTTGAACAAAGGACTAATTAATATTTTATAAT
ACACATAAGCAAACCAGCAACAGCCATAAACAAATGCAGGTGCAATCACG
AACGTTGATGAAGCGATCAGCTTCATTTGAAGGGAATGGCTCTGATCACG
ACTTGGTGGTACAAAGCTGCGAGTCCAGCTCCAACGAATGGTCCCACCCA
AAAAATCCAGTGGTCATCCCAACCGCGGTCCTTGTTGTAAATGATTGCAG
CTCCAAGACTCCTCGCTGGGTTGATGCCAGTTCCGGTAATTGGGATAGTG
GCCAAGTGAACCAAAAACACAGCGAACCCAATTGGCAGAGGAGCCAAAAT
AGGAACATGAGAGTCCCTGGCGCTCCGTTTGGCATCAGTGGCAGAAAAAA
CTGTGTAGACAAGAACAAAAGTACCAATAATCTCGGCACCAAGACCATCA
CCCTTGGTGTAGCCATGAGCTACAAC
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