CN189295

Overview
NameCN189295
Unique NameCN189295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = -1
Query:  344 GYTKGDGLG------AEIIGTFVLVYTVFSAT-DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 664
            G+    G+G       E   TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NPAR  G A++  +   W  HW++W+GPFVGAGLA L ++ ++
Sbjct:  137 GFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRG----HVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFVGAGLAGLLYEYLV 243          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = -1
Query:  344 GYTKGDGLG------AEIIGTFVLVYTVFSAT-DAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 664
            G+    G+G       E + TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NPAR  G A++  +   W  HW++W+GPF+GAGLA L ++ ++
Sbjct:  136 GFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRG----HVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFLGAGLAGLVYEYLV 242          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  356 VAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 673
            V+ G T+ +G+  EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A+      G   +W++WVGP +G GLA L +
Sbjct:  133 VSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAADFAG---NWVYWVGPLIGGGLAGLVY 232          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  356 GYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 664
            G ++ +G+  EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A+      G   +W++WVGP VG GLA L +
Sbjct:  135 GISEIEGVVMEIVITFALVYTVYATAADPKKGSLGT----IAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAG---NWVYWVGPLVGGGLAGLVY 231          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  344 VVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 676
            VV +  + G  +  E++ T  LV  VF++TD+++++      I      G +V L HL  I  TG  +NPARS G AII  K   +  HW+FWVGP +GA LA+L +  V+
Sbjct:  134 VVRNSVSTGQAVAVELLLTLQLVLCVFASTDSRQTSGSPATMI------GISVALGHLIGIHFTGCSMNPARSFGPAIIIGK---FTVHWVFWVGPLMGALLASLIYNFVL 235          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  356 GYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 664
            G ++ +G+  EI+ TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A+      G   +W++WVGP +G GLA L +
Sbjct:  135 GISELEGVVMEIVITFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAG---NWVYWVGPLIGGGLAGLVY 231          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  344 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 664
            GYT    L  E++ TF+ +  +  +TD +R+ +       AP+ IG ++ L+HL +IP+T T +NPARS G A+    D    + W+FW+ P VGA LA L++   +
Sbjct:  129 GYTLLACLVCEVVMTFMFLMIILGSTD-RRAPKG-----FAPIAIGLSLTLIHLISIPVTNTSVNPARSTGPALFVG-DWAIAELWLFWLAPIVGAALAGLFYHAFL 228          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.100e-12
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  347 VAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVV 673
            +++G T  + +  EI+ TF LVYTV++ A D K+      + I+APL IG  V    L      G  +NPA S G A++      W +HW++WVGPF+GA +AA+ +  +
Sbjct:  135 LSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKG----DIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV---SWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 73.559 bits (179), Expect = 1.100e-12
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  341 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIR 673
            +A G + G G+  E + TF+LV+ V    D +R+     V   APL IG ++   HLA I  TG  +NPARS G A++      + D W++WVGP VG  +A   +++  +
Sbjct:  134 IAPGLSTGQGVLIEALITFMLVFVVHGVCDNRRT----DVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPAVVMG---NYTDLWVYWVGPIVGGIVAGAVYRLFFK 237          
BLAST of CN189295 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  344 VAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAA-LYHQVVI 673
            VA G     G+  EII TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA  P +G  +NPARS G A++      +  +WI+W GP +G GLA  +Y  V I
Sbjct:  133 VAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGT----IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAG---DFSQNWIYWAGPLIGGGLAGFIYGDVFI 237          
The following BLAST results are available for this feature:
BLAST of CN189295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
TIP31_ORYSJ4.938e-1337.72Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP31_MAIZE4.938e-1336.84Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP22_MAIZE4.938e-1341.12Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP23_MAIZE6.449e-1341.35Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
AQP6_HUMAN6.449e-1338.74Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
TIP21_ORYSJ8.423e-1340.38Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
AQPZ_GLOVI8.423e-1336.45Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
TIP13_ARATH1.100e-1237.27Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
AQP_ANOGA1.100e-1236.04Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
TIP2_TOBAC1.437e-1241.07Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189295 ID=CN189295; Name=CN189295; organism=Citrus sinensis; type=EST; length=676bp
TTTTTTTTTTTTTTTTTAAAGAACTAGTTTTGTCCATATTATTACCAAGA
TGACATTGCACAAATCCATAGCCATACAAATGTACAAAGTGACAGCGCCC
ACCTACTTAACCATGGGCCCATCCGTCATCATCATCCACCTCTCTTCAAA
ATTAAAAAAAAAAAAAACGTTTTAAGGAAGGAAAACAGAAAAGCAGGCCC
AGGTCCAGCACCAGCAGATTTGAACAAAGGACTAATTAATATTTTATAAT
ACACATAAGCAAACCAGCAACAGCCATAAACAAATGCAGGTGCAATCACG
AACGTTGATGAAGCGATCAGCTTCATTTGAAGGGAATGGCTCTGATCACG
ACTTGGTGGTACAAAGCTGCGAGTCCAGCTCCAACGAATGGTCCCACCCA
AAAAATCCAGTGGTCATCCCAACCGCGGTCCTTGTTGTAAATGATTGCAG
CTCCAAGACTCCTCGCTGGGTTGATGCCAGTTCCGGTAATTGGGATAGTG
GCCAAGTGAACCAAAAACACAGCGAACCCAATTGGCAGAGGAGCCAAAAT
AGGAACATGAGAGTCCCTGGCGCTCCGTTTGGCATCAGTGGCAGAAAAAA
CTGTGTAGACAAGAACAAAAGTACCAATAATCTCGGCACCAAGACCATCA
CCCTTGGTGTAGCCATGAGCTACAAC
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